Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02062 ATGGCACCAAAAGCAGATAAGAAGCCAGCGGAGAAGAAGCCGGCGGAGGAGAAGAAGTCCACCGTAGGAGACAAGGCTCCGGCTGAGAAGAAACCGAAGGCAGGGAAGAAGCTTCCGAAGGAAGGAGGAGCCGGTGATAAGAAGAAGAGACACAAGAAGAGTGTGGAGACATACAAGATCTACATCTTCAAGGTTTTGAAGCAGGTTCACCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAATGACATTTTCGAGAAGCTTGCCCAAGAATCTTCTAGACTTGCCCGCTACAACAAGAAACCTACCATCACTTCAAGGGAAATCCAGACCGCGGTCAGGCTTGTGCTACCTGGAGAATTGGCCAAACATGCTGTCTCTGAGGGTACCAAGGCTGTTACAAAGTTCACCAGTTCTTAA 438 0.4909 MAPKADKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGDKKKRHKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02062 145 Gene3D Histone, subunit A 1 145 IPR009072 GO:0046982
Vimu5g02062 145 SMART h2b3 48 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 MobiDBLite consensus disorder prediction 1 53 - -
Vimu5g02062 145 SUPERFAMILY Histone-fold 29 145 IPR009072 GO:0046982
Vimu5g02062 145 Pfam Core histone H2A/H2B/H3/H4 4 121 IPR007125 GO:0003677
Vimu5g02062 145 PRINTS Histone H2B signature 58 76 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 PRINTS Histone H2B signature 77 97 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 PRINTS Histone H2B signature 99 116 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 PRINTS Histone H2B signature 116 129 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 PRINTS Histone H2B signature 129 142 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 ProSitePatterns Histone H2B signature. 113 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 PANTHER HISTONE H2B 11 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02062 145 FunFam Histone H2B 15 145 - -
Vimu5g02062 145 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02062 Vimu-Chr5 32406398 32406835 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02062 K11252 - gmx:100305866 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02062 5 32406398 32406835 Vimu5g02062 5 32406398 32406835 ECH