Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02060 ATGGCACCAAAGGCAGAGAAGAAGCCAGCAGAGAAGAAGCCTGCGGAGGAGAAGAAGTCCACAGTAGGAGACAAGGCTCCGGCGGAGAAGAAGCCTAAGGCAGGAAAGAAGCTTCCGAAGGAGGGAGGAGCCGGCGGCGATAAGAAGAAGAAGAGAAGCAAGAAGAGTGTGGAGACATACAAGATCTACATCTTCAAGGTCTTGAAGCAGGTTCACCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCTAGACTTGCCCGTTACAACAAGAAACCCACCATCACTTCAAGGGAAATCCAAACTGCGGTCAGGCTTGTATTACCCGGAGAATTGGCCAAACATGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGTTCTTGA 444 0.4977 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02060 147 ProSitePatterns Histone H2B signature. 115 137 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 PANTHER HISTONE H2B 11 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 Gene3D Histone, subunit A 23 147 IPR009072 GO:0046982
Vimu5g02060 147 SMART h2b3 50 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 PRINTS Histone H2B signature 60 78 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 PRINTS Histone H2B signature 131 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 PRINTS Histone H2B signature 118 131 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 PRINTS Histone H2B signature 101 118 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 PRINTS Histone H2B signature 79 99 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g02060 147 FunFam Histone H2B 16 147 - -
Vimu5g02060 147 SUPERFAMILY Histone-fold 39 147 IPR009072 GO:0046982
Vimu5g02060 147 Pfam Core histone H2A/H2B/H3/H4 4 123 IPR007125 GO:0003677
Vimu5g02060 147 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02060 Vimu-Chr5 32398533 32398976 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02060 K11252 - gmx:100305866 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02060 5 32398533 32398976 Vimu5g02060 5 32398533 32398976 ECH