Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02045 ATGATCTGTGGGAGAAGAAAAACGATTAATCCAAATCCATTGCTTCATTATGCTAAGAATGGATCCCAATTCCACACCCATAAACCTCGACCCAATGAAAGACCAACTCGTCCAAAATTTCGCAGGCGCATTCCCTTCGTCGCCGAAGTCAAAACAGTGGAAGACCCAGAAGAAGCATTGTCTCTCTTTCACCGTTACAAGGAACACGGTTTCCGCCACTATTACCCTTCCTATGCTGCATTGCTCTACAAATTAGCTCGTTCTAGAATGTTCGAAGCCGTGGAAACCATTCTCGCTCACATGAAAGAAACCGATATGCAATGCAGAGAGAGCGTCTTCATTGCTCTCTTTCAATATTACGGTCCCCAAAAGGCCGTTGAACTCTTCAACAGAATACCGCAGTTCAACTGTGTCCGCACCATACAGTCCTTCAACGCTCTTCTCAATGTTCTTGTAGACAATGATAGGTTCGATGAGGCCAATGATGTTTTTGGTCGATCCTATGAAATGGGTTTTCGTCCAAACACTGTCACTTTCAATATAATGACTAAAGGGTGGTTGAGAAAGGGCGAGTGGGGGAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGCGTCGTCACTTACAATAGTCTCATTGGGTTTTTGTGTAGGAAAGGTGATTTGGATAAAGCAATGGCCTTGCTTGAGGACATGGGTCAGAAAGGTAGACGCGCAAATGAAGTAACTTATGCTCTGTTGATGGAGGGTTTGTGTTCCTTGGAGAAGTATGATGAAGCTAAGAAGCTAATGTTTGATATGGCGTATCGTGGGTGTAAACCCCAGCCAGTCAATTTTGGTGTACTGATGAATGATCTTGGGAAGAGAGGAAAGGTTGAAGAGGTCAAGTCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACTTTCAACATATTGATAAATTATCTTTGCAAGGAAGGCAAAGCTGTGGAAGCTTACAAAGTTTTATTTGAGATGCAGATTGGTGGATGTGAGCCAAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCGGGTAGGGGATTTTGAGATAGGTCTGAGTGTTTTGAATGCAATGCTAACAAGTAGACATTGTCCACGATCGGAAACATTTAATTGTCTGGTTGTTGGCCTTTTGAAATCTGGGAATATTGATGGTGCATGCTTTGTCCTGGAACAGATGGAGAAGAGAAAGGTAGAATTTGATTTGGTGAGCTGGGAAACCATAATAAAGTTTTCCTGCAGTGAGGATAAGGGTGTGAGTGAGCTTATCACTCTACTTACATCTTCGTAA 1347 0.4313 MICGRRKTINPNPLLHYAKNGSQFHTHKPRPNERPTRPKFRRRIPFVAEVKTVEDPEEALSLFHRYKEHGFRHYYPSYAALLYKLARSRMFEAVETILAHMKETDMQCRESVFIALFQYYGPQKAVELFNRIPQFNCVRTIQSFNALLNVLVDNDRFDEANDVFGRSYEMGFRPNTVTFNIMTKGWLRKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGRRANEVTYALLMEGLCSLEKYDEAKKLMFDMAYRGCKPQPVNFGVLMNDLGKRGKVEEVKSLLHEMKKRRLKPDVVTFNILINYLCKEGKAVEAYKVLFEMQIGGCEPNAATYRMVVDGLCRVGDFEIGLSVLNAMLTSRHCPRSETFNCLVVGLLKSGNIDGACFVLEQMEKRKVEFDLVSWETIIKFSCSEDKGVSELITLLTSS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vimu5g02045 448 Gene3D Tetratricopeptide repeat domain 310 380 IPR011990 GO:0005515
Vimu5g02045 448 Gene3D Tetratricopeptide repeat domain 381 446 IPR011990 GO:0005515
Vimu5g02045 448 Gene3D Tetratricopeptide repeat domain 245 309 IPR011990 GO:0005515
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vimu5g02045 448 Gene3D Tetratricopeptide repeat domain 52 122 IPR011990 GO:0005515
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vimu5g02045 448 Pfam PPR repeat family 209 258 IPR002885 -
Vimu5g02045 448 Pfam PPR repeat family 314 363 IPR002885 -
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Vimu5g02045 448 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 209 435 - -
Vimu5g02045 448 SUPERFAMILY TPR-like 144 338 IPR011990 GO:0005515
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vimu5g02045 448 Gene3D Tetratricopeptide repeat domain 123 244 IPR011990 GO:0005515
Vimu5g02045 448 Pfam PPR repeat 170 202 IPR002885 -
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 388 420 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 143 176 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 317 351 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 247 279 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 353 384 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 212 241 IPR002885 -
Vimu5g02045 448 NCBIfam pentatricopeptide repeat 285 316 IPR002885 -
Vimu5g02045 448 MobiDBLite consensus disorder prediction 18 38 - -
Vimu5g02045 448 Pfam PPR repeat 388 416 IPR002885 -
Vimu5g02045 448 Pfam PPR repeat 284 311 IPR002885 -
Vimu5g02045 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02045 Vimu-Chr5 32283445 32284791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02045 144 434 Glycosyltransferase AT1G05670 28.082 7.30e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02045 - - gmx:100776556 810.831