Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02031 ATGTTGGTGAGGCGTTTCTCAGTGAAATCGCGGTTGAATTGCGCTCTTACCTCAACAGTATTTCAACACTGCTTCTCAAGCTCCAATGAAAACGATGACGTACAGAAAGTGTTCGGCATACTCAGCAGCACCTCCACGCCGGAACAGCTGAAACAATCCCTGAAATCAAGCGGTGTTTTCCTCTCCAATGAATTGATCGATCAAGTTCTCAAGAGGGTTCGATTCAGCCATGGGAACCCCTCCCAGACGCTTGAGTTTTTCCGTTACACCGGAAGAAGGAAAGGGTTTTACCACACTGCGTTTTCCCTCGACACCATGCTCTACGTTCTTGGAAGAAGCCGCATGTTTGGTCACGTTTGGGACCTCTTAATCGAATGCCGTCGAAAAGACCAAACGGCCATAACGGCTCGCACCGTTATGGTCGTGTTGGGCAGAATTGCCAAAGTGTGTTCAGTTCGACAAACGGTGGACTCGTTTAGAAAGTTTAGAAAGCTGGTGACTGAGTTTGATACTAATTGTTTCAATGCTCTGTTGAGAACGCTGTGTCAGGAGAAGAGCATGACGGATGCTAGAAACGTTTACCATAGTTTGAAGCATCGGTTTCGCCCAAATTTACAGACTTTTAACATTCTTCTTTCCGGGTGGAAGACCTCTGAGGATGCTGAGGGGTTCTTGAAGGAGATGAAGGAAATGGGGGTGACACCTGATGTTGTTACATACAATAGTTTGGTGGATGTTTACTGCAAGGGGAGGGAAATTGAGAAGGCGTATAAGGTGCTTGAGGAAATGCGTGAACAGTATTTGTCGCCGGATGTGATCACGTATACATGTATCATTGGTGGGTTGGGGTTGATTGGGCAGCCTGATAAAGCCAGAGATGTTTTGAAGGAGATGAAGGAGTATGGGTGTTACCCTGATGTTGCAGCCTACAATGCCGCCATCAGGAATTTCTGCATTGCAAAGAGGCTTGGTGATGCTAATGGTTTGGTGGAGGAGATGGTAAGCAAGGGTTTGAGTCCGAATGCAACTACTTACAATTTGTTCTTTAGGGTATTTTACTGGTCCAATGATTTGCATAACTCTTGGATCATGTACAATAGGATGATGGTTGAGGGGTGCCTTCCGAATACGCAGTCTTGTATGTTCTTGATAAGGTTGTTTAGAAAGTATGAGAAGGTGGATATGGCGCTGCAGTTATGGGGGAACATGGTGGAAAAGGGTTTTGGGTCGTATACCTTGGTTTCTGACGTGCTGTTTGACTTGCTTTGTGATATGGGGAAGTTGGAAGAAGCAGAGAAGTGCTTTTTGGAGATGATTGAAAAAGGGCAGAAACCGAGTAATGTGTCGTTTAGAAGAATTAAGGTTCTTATGGAACTAGCAAATAGACATGAGGCCCTTGAGATCTTGACGGAGAAAATGTCCATATTTGGGCGACCACTCCAATTGCATCAAAGTTCGATGAGCAAAGCTGAGACAGCGGATTCTCTCTTTAATAATAGTTAG 1503 0.4511 MLVRRFSVKSRLNCALTSTVFQHCFSSSNENDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSNELIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHTAFSLDTMLYVLGRSRMFGHVWDLLIECRRKDQTAITARTVMVVLGRIAKVCSVRQTVDSFRKFRKLVTEFDTNCFNALLRTLCQEKSMTDARNVYHSLKHRFRPNLQTFNILLSGWKTSEDAEGFLKEMKEMGVTPDVVTYNSLVDVYCKGREIEKAYKVLEEMREQYLSPDVITYTCIIGGLGLIGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIAKRLGDANGLVEEMVSKGLSPNATTYNLFFRVFYWSNDLHNSWIMYNRMMVEGCLPNTQSCMFLIRLFRKYEKVDMALQLWGNMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCFLEMIEKGQKPSNVSFRRIKVLMELANRHEALEILTEKMSIFGRPLQLHQSSMSKAETADSLFNNS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02031 500 Gene3D Tetratricopeptide repeat domain 254 357 IPR011990 GO:0005515
Vimu5g02031 500 Gene3D Tetratricopeptide repeat domain 125 253 IPR011990 GO:0005515
Vimu5g02031 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vimu5g02031 500 Pfam PPR repeat family 305 350 IPR002885 -
Vimu5g02031 500 Pfam PPR repeat family 235 282 IPR002885 -
Vimu5g02031 500 SUPERFAMILY TPR-like 176 475 IPR011990 GO:0005515
Vimu5g02031 500 Pfam Pentatricopeptide repeat domain 168 213 IPR002885 -
Vimu5g02031 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Vimu5g02031 500 Pfam PPR repeat 418 442 IPR002885 -
Vimu5g02031 500 Pfam PPR repeat 383 408 IPR002885 -
Vimu5g02031 500 Gene3D Tetratricopeptide repeat domain 358 495 IPR011990 GO:0005515
Vimu5g02031 500 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Vimu5g02031 500 NCBIfam pentatricopeptide repeat 238 271 IPR002885 -
Vimu5g02031 500 NCBIfam pentatricopeptide repeat 418 446 IPR002885 -
Vimu5g02031 500 NCBIfam pentatricopeptide repeat 273 307 IPR002885 -
Vimu5g02031 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Vimu5g02031 500 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 218 472 - -
Vimu5g02031 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02031 Vimu-Chr5 32186171 32189568 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02031 174 475 Miscellaneous Gene Families AT4G11690 28.438 1.67e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02031 - - vun:114183049 941.028