Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02025 ATGGAGTCACCAACTGTGCAGCCGCAAGCTGTATCAGCAAGCACGCCAAGGAAAAAAATGACAAAACAATTGACGGGTAAAAGGGATGATACCCCTTTGCATTCTGCAGCCAGAGCAGGGAATCTGAGCGTTCTGAAAGACACAGTTAGTTGCACTGAAGGGGCTGAACTGCGTGCGTTGTTGACAAAGCAGAACCATGCGGGAGAAACGGTGCTTTATGTTGCTGCTGAATATGGTTATGTTGATATGGTTAGGGAGATGATTCAATATTACGATCTTGCTGGTGCTGGAACTAAGGCAAGGAATGGTTTCGATGCACTCCACATTGCTGCCAAACAAGGCGATTTAGATATTGTGAAGATCCTAATGGAGGCTCATTCTGAGTTGTCAATGACAGTGGATCCATCCAACACCACAGCCCTGCACACTGCTGCATTACAAGGGCACATTGAGATTGTAAAATTTCTATTGGAAGCAGGTAGTAGTCTGGCAACTATTGCTAGAAGTAATGGAAAAACGGCTTTACATTCTGCAGCAAGAAATGGACATGTAGAGGTTGTGAAAGCACTTATGGAGAAGGAGCCGGCAGTTGCAACGCGAACTGATAAGAAGGGACAGACAGCACTTCACATGGCAGTGAAGGGACAGAATCTTGAGGTGGTCGAGGAGTTGATAAAAGCTGATCCCTCAACAATAAACATGGTTGATAACAAGGGTAACACGCCACTGCATATAGCAACCAGGAAGGGCAGAGCTCAGATTGTTAAGTTGCTTGTTGGACAGACAGAAACAGATTCCTTGGCTGTTAACAAGTCTGGCGAAACTGCATTAGACACTGCTGAAAAAGCTGGGAACTCTGAAGTTAAAGACATTCTACTGGAACACGGTGTTCGAAGTGCGAAAGCCTTAAAGACTCAGCCAGCAACAGCCACAGCCCGTGAGTTGAAACAAACTGTGAGTGACATAAAACATGAAGTCCACTACCAGTTGGAACACACCCGCCAAACCAGAAGAGGTGTTCAAGGCATAGCCAAACGTATCAACAAAATGCATGCTGAAGGACTCAACAATGCAATAAACTCCACCACTGTGGTTGCAGTCCTCATTGCCACAGTTGCCTTTGCAGCTATTTTCACAGTCCCAGGCCAATTTGCTGATGATCCAAAAGACATTCCTCCAGGTTCGGGGATGACCATTGGTGAAGCAAACATAGCCCCACAAGCTGCATTTCTCATTTTCTTTGTCTTTGATTCCATTGCCCTCTTCATTTCTCTGGCTGTGGTGGTGGTGCAGACCTCGGTTGTGATCATAGAAAGCAAGGCAAAGAAGCAGATGATGGCCATCATTAACAAGCTGATGTGGTTGGCTTGTGTGCTAATTTCTGTGGCCTTCTTAGCACTGTCATTTGTAGTGGTGGGGAAGGATCAAAAGTGGCTTGCAATTGGAGTCACTATCATAGGGACAACTATAATGGCCACAACTTTAGGCACCATGTGTTACTGGGTTATTAGGCATCGCATTGAGGCCTCAAATCTAAGGAGCATTCGGAAATCCTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGTATCAGTTATGTCAGATTCTGAGCTACTAAACAATGACCGCAAGATACTTTATGCCATATAG 1647 0.4536 MESPTVQPQAVSASTPRKKMTKQLTGKRDDTPLHSAARAGNLSVLKDTVSCTEGAELRALLTKQNHAGETVLYVAAEYGYVDMVREMIQYYDLAGAGTKARNGFDALHIAAKQGDLDIVKILMEAHSELSMTVDPSNTTALHTAALQGHIEIVKFLLEAGSSLATIARSNGKTALHSAARNGHVEVVKALMEKEPAVATRTDKKGQTALHMAVKGQNLEVVEELIKADPSTINMVDNKGNTPLHIATRKGRAQIVKLLVGQTETDSLAVNKSGETALDTAEKAGNSEVKDILLEHGVRSAKALKTQPATATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADDPKDIPPGSGMTIGEANIAPQAAFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNDRKILYAI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02025 548 MobiDBLite consensus disorder prediction 1 20 - -
Vimu5g02025 548 Gene3D - 13 130 IPR036770 -
Vimu5g02025 548 Pfam Domain of unknown function 353 471 IPR026961 -
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat profile. 136 168 IPR002110 GO:0005515
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat region circular profile. 136 163 - -
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat region circular profile. 238 259 - -
Vimu5g02025 548 SUPERFAMILY Ankyrin repeat 32 297 IPR036770 -
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat profile. 204 226 IPR002110 GO:0005515
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vimu5g02025 548 Gene3D - 131 299 IPR036770 -
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat profile. 238 259 IPR002110 GO:0005515
Vimu5g02025 548 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 528 - -
Vimu5g02025 548 SMART ANK_2a 67 96 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 238 269 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 136 165 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 204 234 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 28 59 IPR002110 GO:0005515
Vimu5g02025 548 SMART ANK_2a 272 302 IPR002110 GO:0005515
Vimu5g02025 548 MobiDBLite consensus disorder prediction 1 33 - -
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat region circular profile. 102 130 - -
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat region circular profile. 204 226 - -
Vimu5g02025 548 Pfam Ankyrin repeats (3 copies) 97 163 IPR002110 GO:0005515
Vimu5g02025 548 Pfam Ankyrin repeats (3 copies) 233 297 IPR002110 GO:0005515
Vimu5g02025 548 Pfam Ankyrin repeats (3 copies) 20 90 IPR002110 GO:0005515
Vimu5g02025 548 Pfam Ankyrin repeats (3 copies) 170 229 IPR002110 GO:0005515
Vimu5g02025 548 ProSiteProfiles Ankyrin repeat region circular profile. 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02025 Vimu-Chr5 32142443 32145343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02025 13 548 Miscellaneous Gene Families AT1G07710 71.828 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02025 - - gmx:100808971 935.636