Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02023 ATGGACGACGAATTGCTCGAGCTGCAGCGACAATTCGAGTTCGCGCAGCAAGCCAAGTCGAGCATTCGATTATCAGAGCGAAACGTCGTCGAATTGGTCCAAAAACTACAGCAACTCCAAATCATAGATTTCGAACTTCTCCACACTGTCTCCGGCAAAGAGTACATCACTCTCGATCAACTGAGGAATGATATGGTGGCTGAGGTGAAGAGATTAGGGCGCGTTTCTTTGATCGATCTCGCTGACTCTACTGGAGTTGACTTGTACTACGTGGAGAAGCAGGCGCAGAGCGTTGTGACAGCACACCGAGAACTCATGTTGACTCAGGGAGAAATCATGTCTAGCTCTTATTGGGACTCAGTCGCGGAAGAGATTAACGAGAGGCTTCAGGAGTGTAGTCAGATTGCGCTGACGGAGATCGCGGCGCAATTGAATGTCGGTTTGGACTTGGTTGCCTCCGTGTTGGACCCGCGCCTTGGAAGAATTGTGAAAGGAAGGCTTGAAGGTGGCCAGCTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGAGGCGCTGTGCGGGGCACCACTGTTCCAACCAATTTGACTGTGGTATGGAGTTCGTTGCAGCAGTTGCTGCAAGAAATTGACGGAACCAGCGGTTTGGCTGTTGAAGGATCTTTCTTCCAGTCATTGTTTAATGGACTCGTGAAGGAAGGGGAGGTTCTAGGGTCACTTCGTGCAGGAGTACATTGGACACCAGCTGTATTTGCTGTTGCTCAAAAGGAGTTTGTGGAGTCATTTTTTTCTCAGAATTCTTTTATCACCTATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTTTTGCAGTCCAGATACCCTGAAGGCAAACCTTTGGTTACAACATTTGTTCATCAATCCATGATTGAGATGCTAGATGCTGCCACGGAGGATGCTATTGACCGTGGTAGCTGGAGTGATTCTCTTTCCTTGTTACCTTCATCTTTTACACCTCAAGATGCTTCTAAAATGTTGTCCTTTTGTCAATCTGTGCAAAATGCTCTTAAGTCTAACAAAGCACACATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAGGACATCTGTGATCATGTTGTGAAAGAGTTGGAGACGTTAGATGTTTCAAGGTCTACTGGCACTACCATGCCTGGAAATGTGAAAGTACCCAATGAAGCAAAAGTAGGACGGGAATCGAGCAGGTTGAACGAGTCCATTGAGATGGCAAGTGATGTTGGTGCCAACAGGCAATCTGATAAAGGATCAAAGAAGAAAAAGGGGAAAGCCACAGGGAATCCAGTAGTAAATCTATCTGAAAGTGGTGCAGATAACCAGGAACACACTTCGACAAAATCTAAGAGAGGCCAGAAAAGAGGTAAGGACACATCTGCACAAACATCTGATTCGAAGACAGGTTCAAGGAAAGAGTTGCTTAAAATAAAAGAGGAAGATCTCAGTCCCTCAGAAGAATGGATCATGCAGAAAATTACAGCATTGGTTTCTGATTTTGAAGAACAAGGTATAGATGATCCTGAAATAATTCTTAGGCCTTTGGCTAACCAATTAAGGCCTACAATAATCAATTCTTGGGTGGAGAAAAAGAAGGCACTGCTTACAAACAATGCAGAAACAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGACGAGTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTGGAATTGTTTGAAGATGATCAATCAACTTCTGTTGTTTTGCATAGGCATTTACTAAGAACAGTAGCAGCTCCTATGGTGGATTTGCTTCTTCATAACCTGGATGAGCACAACAAATTAAAGAATGGACTTGACGTGCAGGAAGCTCCAAATTCTGAATTTGTTTCACTTAGTCCTGCTGACAGAACTGCAATTTCTAAGAGTTTTCCAGGAGCTCTTGCAAACAAGGCTCTTGCTGTTGTTGAATCATTGGAAGGAAAGAGTGTGGAGACATTCATGGCTGCTTTTAGAATGGTTACAGAAGAGAGTGGGCTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTCTTACATTCATATCGTAAGGAATTGACATCTCAAGTTTCTGCCGAGACTGACCCTGTATCACTTCTAGCAAAAGTTGTCTCTTTACTTTATATCCAGGTTTACCACAAAGCTCTTCATGCTCCTGGAAGGGCCATTTCCGTTGCCATTTCTCATTTAAGGGATAAGGTAGATGAGTCGGCATGCAAGATTTTAACTGATTATCAGACTGCCACAGTCACTCTTTTGACACTTGTAGCAGCTTCACCCGGTGAGGATGAGGATTGTGTATCTGATAGGATTTTGAGTACAAGGGAACTTCTAGAGAGCCAAATGCAGGACCTCAAAAGCTTGGTTTTGGGCACGACCCAATCTTCATAA 2460 0.4386 MDDELLELQRQFEFAQQAKSSIRLSERNVVELVQKLQQLQIIDFELLHTVSGKEYITLDQLRNDMVAEVKRLGRVSLIDLADSTGVDLYYVEKQAQSVVTAHRELMLTQGEIMSSSYWDSVAEEINERLQECSQIALTEIAAQLNVGLDLVASVLDPRLGRIVKGRLEGGQLYTPAYVARVGAMVRGAVRGTTVPTNLTVVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEGEVLGSLRAGVHWTPAVFAVAQKEFVESFFSQNSFITYEALHKLGIPQPIQFLQSRYPEGKPLVTTFVHQSMIEMLDAATEDAIDRGSWSDSLSLLPSSFTPQDASKMLSFCQSVQNALKSNKAHIFGDFYVLSSSFIKDICDHVVKELETLDVSRSTGTTMPGNVKVPNEAKVGRESSRLNESIEMASDVGANRQSDKGSKKKKGKATGNPVVNLSESGADNQEHTSTKSKRGQKRGKDTSAQTSDSKTGSRKELLKIKEEDLSPSEEWIMQKITALVSDFEEQGIDDPEIILRPLANQLRPTIINSWVEKKKALLTNNAETMKRLLDNLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDLLLHNLDEHNKLKNGLDVQEAPNSEFVSLSPADRTAISKSFPGALANKALAVVESLEGKSVETFMAAFRMVTEESGLPLKKLDKKLERTLLHSYRKELTSQVSAETDPVSLLAKVVSLLYIQVYHKALHAPGRAISVAISHLRDKVDESACKILTDYQTATVTLLTLVAASPGEDEDCVSDRILSTRELLESQMQDLKSLVLGTTQSS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02023 819 MobiDBLite consensus disorder prediction 391 494 - -
Vimu5g02023 819 MobiDBLite consensus disorder prediction 460 478 - -
Vimu5g02023 819 PANTHER E3 UFM1-PROTEIN LIGASE 1 2 818 IPR018611 GO:0061666|GO:0071569
Vimu5g02023 819 Pfam E3 UFM1-protein ligase 1 4 288 IPR018611 GO:0061666|GO:0071569
Vimu5g02023 819 Coils Coil 549 583 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02023 1 785 EF-hand Containing Proteins AT3G46220 62.135 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02023 K22755 - gmx:100808087 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02023 5 32129710 32140275 Vimu5g02023 5 32129710 32140275 ECH