Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01997 ATGGCAGCGTCACGAATCGTAGCCCATCCACCGCCCTATCTCCACCGCCAGTGTTCGCCGTCAGACGCCGTGTCATTCCCCAACCCCACGCTTCACCCAAAACGTTACCGTAACCTCAGCATTCGTTCTTCTCTTCACGAGGGGAAGCAGAAGAAGAACGATCTCGCTGATAAACCTCACTCAGTCGAATTGCGAACCAGCCCCAACGACGTCGTTTCCCGCAATCCGCTCGTTCTTCCGCGGCCTTTATCTGCTTCAGTTTCTGACGGTTCTGGCCTTCGTGTGGCATATCAGGGGGTTCATGGTGCGTACAGTGAATCAGCAGCACATAAGGCCTACCCAAATTGTGAAGCTGTGCCGTGTGAACAATTTGAAACCACTTTTGATGCTGTTGAAAGGTGGATTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGTATCCATAGAAATTATGACCTTTTAATCCGCCATAGTTTACACATAGTAGGAGAAGTAAAATATGCCGTCCGTCACTGTTTGATGGCCAACCATGGTGTTAAACTTGAGGATTTGAACCGAGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTGGGATTGGTGCGAGAAGCAGTTGATGATACAGCTGGTGCCGCTAAGCAAGTTGCCTTGCTCGGACTACAAGATGCAGGAGCAGTTGCTAGTTCTTCTGCCGCAAAGATCTATGGGTTGAATATACTTGCTGAAGACATTCAGGATGACAGTGATAATGTCACTCGATTTTTAATGTTAGCGCGAGAACCTATAATTCCAGGCATTGATAGGCCATTTAAGACAAGCATAGTTTTTTCTTTAGAAGAAGGTCCCGGGGTTCTTTTCAAGGCCCTTGCTGTTTTTGCATTGCGTCAGGTTAACCTCACAAAGATTGAAAGCCGACCTCTGCGAAACCAACCACTACGAGCATCAGATGATAGCAGCAATTCCAAGTATAATTACTGA 1008 0.4692 MAASRIVAHPPPYLHRQCSPSDAVSFPNPTLHPKRYRNLSIRSSLHEGKQKKNDLADKPHSVELRTSPNDVVSRNPLVLPRPLSASVSDGSGLRVAYQGVHGAYSESAAHKAYPNCEAVPCEQFETTFDAVERWIVDRAVLPIENSLGGSIHRNYDLLIRHSLHIVGEVKYAVRHCLMANHGVKLEDLNRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKQVALLGLQDAGAVASSSAAKIYGLNILAEDIQDDSDNVTRFLMLAREPIIPGIDRPFKTSIVFSLEEGPGVLFKALAVFALRQVNLTKIESRPLRNQPLRASDDSSNSKYNY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01997 335 CDD ACT_CM-PDT 281 321 - -
Vimu5g01997 335 Gene3D - 89 177 - -
Vimu5g01997 335 SUPERFAMILY ACT-like 264 322 IPR045865 -
Vimu5g01997 335 CDD PBP2_Ct-PDT_like 94 271 - -
Vimu5g01997 335 ProSiteProfiles Prephenate dehydratase domain profile. 94 269 IPR001086 GO:0004664|GO:0009094
Vimu5g01997 335 Gene3D - 178 257 - -
Vimu5g01997 335 MobiDBLite consensus disorder prediction 43 68 - -
Vimu5g01997 335 Pfam Prephenate dehydratase 95 271 IPR001086 GO:0004664|GO:0009094
Vimu5g01997 335 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 55 330 - -
Vimu5g01997 335 ProSitePatterns Prephenate dehydratase signature 2. 309 316 IPR018528 GO:0004664|GO:0009094
Vimu5g01997 335 FunFam Arogenate dehydratase 89 176 - -
Vimu5g01997 335 ProSitePatterns Prephenate dehydratase signature 1. 245 267 IPR018528 GO:0004664|GO:0009094
Vimu5g01997 335 MobiDBLite consensus disorder prediction 43 64 - -
Vimu5g01997 335 FunFam Arogenate dehydratase 177 257 - -
Vimu5g01997 335 ProSiteProfiles ACT domain profile. 283 335 IPR002912 -
Vimu5g01997 335 Gene3D - 272 325 - -
Vimu5g01997 335 SUPERFAMILY Periplasmic binding protein-like II 94 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01997 Vimu-Chr5 31780150 31783080 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01997 K05359 - gmx:100787387 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01997 5 31780150 31783080 Vimu5g01997 5 31780150 31783080 ECH