Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01988 ATGTCGGCACCGCAGAGATTTCTCTGCACTCTCTCCCACGCCATTCCTCGCTCTTCTTCTCTCTGCACCTTCAAATCTAGAACCTTCCTTTTCCTTCCCTTCGTTCGCTCATACCTCACCCTAACTCCCTTGCTCTCTCCAATGCCTCGCAATCAGCGAAGTGGCGCGCACATGGAGCGGCGATGGAAAGAGAAAGCCAAAACTGAGGCGAAGTTGCCGGCTACGGGAGACGTAGCTGCTGTAACTGCTGCGGAAACTGTTACTAATAAGATTGCTGGATTGAGTATTGGTGATAACGGTGGGAAAACCGGTGCGCACGGTTCCATTTGGAAACCTAAATCTTATGGAACTGCGAGTGGAGGCGCTGTTACTGAAGTGGAAAATGGAGCTGGAGTTGAGGCAAGTGTGGCTTCGACGCACAAGAATGGTGGAAGTAGTTTGAGTAAGATATTTCGAGGTAATCTGTTAGAGAAATTCACTGTGAACAACTCCACGTACACACGTGCACAAATCAGAGCGACTTTCTATCCCAAATTTGAAAATGAAAAGTCGGATCAAGAGGTCCGGACCAGGATGATTGAGTTGGTAGCAAAAGGGTTGGCTACCTTAGAGGTTTCACTTAAACATTCTGGCTCTCTTTTTATGTATGCGGGTCATGAGGGTGGAGCTTATGCAAAAAACAGTTTCGGAAATATATATACTGCTGTTGGTGTATTTGTTCTTGGACGGATGTTTCGTGAGGCATGGGGAACTGAAGCTTCAAAAAAGCAGGCTGAATTTAATATTTTTCTTGAGAGAAACCACATGTGCATATCAATGGAACTAGTAACCGCTGTTCTTGGAGACCATGGACAGCGTCCCCAAGAAGATTATGGTAAAATTCTTTTACTTTCGGTGGTTACGGCAGTTACTGAATTGGGCAACGGAAAGCCAAAGTTCTATTCAACTCCTGAGATAATAGCTTTCTGTCGAAAATGGCGCCTTCCAACAAATCATGTGTGGCTGTTTTCAACAAGAAAATCAGCCACTTCTTTCTTTGCTGCGTATGATGCCTTATGTGAGGAGGGTACTGCAACGTCTGTATGCAAGGCTCTTGATGAAATTGCTGACATCTCAGTACCAGGTTCAAAAGACCATGTTAAGGCCCAAGGTGAAATTTTAGAAGGTCTTGTGGCTCGTCTTGTAAGTCATGATAGTTCAAACCAGATAGAGAAAACTTTGAAAGAATTTCCACCTCCACCTGCCGATGGAGTGGCCCTTGATTTTGGACCAAGTCTAAGGGAAATATGTGCAGAAAATAGAGATAATGAAAAACAGCAAATAAAAGCACTTCTCGAGAGTGTTGGTAGTTCTTTTTGTCCAAGCCAGTTGGATTGGTTTGGGACTCATGGTGCAGATTATCATTCAAGAAATGTGGACAGATCTGTTCTTTCAAAATTTTTACAAGCCCATCCTGCAGACTATTCAACTAAAAAGTTGCAGGAAGTTGTTCGGTTAATGAGGGAGAAACGCTACCCTGCTGCCTTCAAATGTTATCATAACTTCCACAAGGTTGATGGCATGTCAAGTGACAATGTTTTCTACAAAATGGTCATTCATGTACACAGTGATTCTGGTTTTCGACGATACCAGAAAGATATGAGGCTTAAGCCAGGATTATGGCCATTATATCGAGGTTTTTTTGTTGATGTAAATTTATTTAACGCAAACAAGGAGACAGCTGAAATTTCTAGTAACAGTGTAAATGAAACTGGTAGCAACAATGCTGGGGAAGATGACTTTGCGGACGAAGATGCAAATTTAATGGTCAAATTGAAATTTCTTACATATAAGCTGCGAACGTTTCTTATTCGAAATGGCCTGTCAATTCTGTTCAAAGAAGGTCCAGCTGCTTACAAGTCTTATTACCTCAGACAAATGAAAATTTGGGGAACCTCTCCAGCAAAGCAGAGAGAACTTAGCAAGATGCTTGATGAATGGGCTGTATATATACGAAGGAAGTGTGGAAATAAGCAACTGTCATCATCAACATATCTGAGTGAAGCGGAACCTTTTCTTGAACAGTTTGCAAAACGTAGTCCACAGAACCAAGTTCTGGTAGGTTCTGCGGGTAATTTAGTTAGAACTGAAGATTTCTTGGCTATCGTTGAGGGAGGCGTGGATGAAGAAGGTGATCTTCTGGCAGAGCGTGAGATAACACTTCCAGGGCCTAATATCTCAGTCAAAGATACAGTTCCAAAATATGAAGGGTTGATTGTATTCTTTCCTGGAATACCTGGTTGTGCCAAGTCCTCCCTTTGCAAAGAATTGCTAAATGCCGAAGGAGGACTAGGAGATGCTCGACCACTTCATAGTCTCATGGGTGACCTGATTAAAGTGCTGCTCAGAACTAATATGGAGTATTGTGGAGTTTCAACAGGAAAATATTGGCAGAAAGTGGCTGAAGAGCGCAGAAAGAAACCAAATTCGATAATGCTTGCTGACAAGAATGCCCCAAATGAAGAAGTTTGGAAACTGATAGAAGACATGTGTCACAAAACCAGGGCATCTGCTGTACCAGTTGTAGCTGAATCTGAAGGAACCGATTCAAATCCTTTTTCTCTTGATGCATTAGCTATTTTCATGTTTCGCGTGCTTCAACGAGTCAATCATCCGGGAAATCTTGACAAAGCATCTCCAAATGCTGGCTATGTGCTGCTAATGTTTTATCATCTCTATGAGGGCAGGAGCCGTAAAGAGTTTGAGGGTGAATTAATTGAGCGTTTCGGATCACTTGTCAAGATGCCACTCCTGAAATCTGATAGGTGTTTCCAAGTACGTGATTTTGGTAAAATTTGGCATGCAAGTCCTGAATACAGCAAGGATCCCCTTCCTAACCCAGTGCAGTCCATTTTGGAGGAAGGAATTGATTTATATAAGCTTCACACTAAGAGACATGGAAGATTAGAGTCTACCAAAGGATCCTACGCAAAAGAATGGTTAAAATGGGAGAAACAGTTACGGGATATTCTTTGTGGAAATGCCGAGTATTTTAATTCTATTCAGGTCCCATTTGAATTTACTGTCAAGCAAGTGTTGGAACAGTTGAGAAGCATTGCGAAGGGAGATTACACACCACCAGATACTGAAATAAGGAAATTTGGTACCATTGTTTTTGCTGCTCTCACCACGCCAGTTACTGAAATTAAAGACGCCCTCAATAAATTGGCCGAGAGTAATCCCAAGATTGACGCATTCCTTAAAGACAAACATCTCGAGAACCTTAATCGAGCTCATGTGACTCTTGCCCACAAGAGAAGCCACGGCATCAAAGCTGTAGCTGATTATGGTATCTATCTTAATAAAAAGGTTCCAGTGGAGTTGGCAGCACTACTCTTCTCAGATAAAATGGCTGCGTTGGAAGCTTGTCCCGGCTCAGTGGAAGGTGAGAAGATAGTCTCAAAAAATCCGTGGCCTCATATAACCTTATGGACTGCTCAAGGTGTTGCACCCAAGGAGGCCAACATGCTACCGCAGTTGTTTGCAGCGGGGAAAGCAACCCGAATTGACTTCAATCCTCCCATCATTTTATCTGGCACAATTGACTTTTATTGA 3594 0.4268 MSAPQRFLCTLSHAIPRSSSLCTFKSRTFLFLPFVRSYLTLTPLLSPMPRNQRSGAHMERRWKEKAKTEAKLPATGDVAAVTAAETVTNKIAGLSIGDNGGKTGAHGSIWKPKSYGTASGGAVTEVENGAGVEASVASTHKNGGSSLSKIFRGNLLEKFTVNNSTYTRAQIRATFYPKFENEKSDQEVRTRMIELVAKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVGVFVLGRMFREAWGTEASKKQAEFNIFLERNHMCISMELVTAVLGDHGQRPQEDYGKILLLSVVTAVTELGNGKPKFYSTPEIIAFCRKWRLPTNHVWLFSTRKSATSFFAAYDALCEEGTATSVCKALDEIADISVPGSKDHVKAQGEILEGLVARLVSHDSSNQIEKTLKEFPPPPADGVALDFGPSLREICAENRDNEKQQIKALLESVGSSFCPSQLDWFGTHGADYHSRNVDRSVLSKFLQAHPADYSTKKLQEVVRLMREKRYPAAFKCYHNFHKVDGMSSDNVFYKMVIHVHSDSGFRRYQKDMRLKPGLWPLYRGFFVDVNLFNANKETAEISSNSVNETGSNNAGEDDFADEDANLMVKLKFLTYKLRTFLIRNGLSILFKEGPAAYKSYYLRQMKIWGTSPAKQRELSKMLDEWAVYIRRKCGNKQLSSSTYLSEAEPFLEQFAKRSPQNQVLVGSAGNLVRTEDFLAIVEGGVDEEGDLLAEREITLPGPNISVKDTVPKYEGLIVFFPGIPGCAKSSLCKELLNAEGGLGDARPLHSLMGDLIKVLLRTNMEYCGVSTGKYWQKVAEERRKKPNSIMLADKNAPNEEVWKLIEDMCHKTRASAVPVVAESEGTDSNPFSLDALAIFMFRVLQRVNHPGNLDKASPNAGYVLLMFYHLYEGRSRKEFEGELIERFGSLVKMPLLKSDRCFQVRDFGKIWHASPEYSKDPLPNPVQSILEEGIDLYKLHTKRHGRLESTKGSYAKEWLKWEKQLRDILCGNAEYFNSIQVPFEFTVKQVLEQLRSIAKGDYTPPDTEIRKFGTIVFAALTTPVTEIKDALNKLAESNPKIDAFLKDKHLENLNRAHVTLAHKRSHGIKAVADYGIYLNKKVPVELAALLFSDKMAALEACPGSVEGEKIVSKNPWPHITLWTAQGVAPKEANMLPQLFAAGKATRIDFNPPIILSGTIDFY 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01988 1197 PANTHER TRNA LIGASE 1 103 1197 IPR038837 GO:0003972|GO:0006388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01988 - - gmx:100815563 2065.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01988 5 31645774 31666518 Vimu5g01988 5 31645774 31666518 ECH