Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01984 ATGGCCATCCCTGAAGGTGAAGAAGACAACTTGTTCTTGATGCATAAACCTAAGAGAATGGTGAAGACTGATGCAGGGGAAATGCTTGTGCTGAAAACCCAAAGTGGTTGTAGGAGGTTTTTAGATAGGCACATGCACATTGCCTTCATCACTATGCAACCAAACTCCTTGTTCGTCCCTCACTACCTTGACTCCAATCTCATCATATTCATCCATAAAGGAGAAGCAAATTTGGGATTCATATATGATGATGAATTGGTGGAAAGGAGATTGAAGGCAGGGGATGTGTATGTGATTCCATCAGGTTCAGCATTTTATTTTGTGAACATGGAGGAAGGTCAGAGACTTCACATCATCTGCAGCATTGACCCTTCTACAAGTTTGGGATTAGATACCTTCCATTCTTTCTATATTGGTGGAGGAGCCAATTCACACTCATTGTTTTCTGAATTCGGACCAGCTATTCTTGAAACTGCATTTAATGAATCAAGAATGGAGGTTGAAAGTATATTTTATAAGGAACTAGATGGGCCAATCATGTACATGGATGATTCTCATGCACCTAGCTTAGGGACTAAATTCCTTCAACTAAAGAAGGAAGAAAAAGAACAACAACTGAACAAAATGCTGCAAGACCAAGAAGAAGAAAAAGAAGAGAAGAAGCAAACAAGTAGTCCATGGGAAAAACTCTTGAACAATGTATTTGGCAAGGTGAATGAGAAGACAGAGAGCAAAAACAGTGTTTATTGGAGCAAGGCAACAAACCTCTATGACAAAAAATCTGATTTCAGAAACGATTATGGTTGGAGCAAGGCACTGGATGGAGTGCAGTATTCTCCACTCACCAAACCTGACACTGGCCTTTTCTATGTCTATCTCAAAGCTGGATCGATGTTGGGACCTCATGTGAATCCAAGGGCATCTGAGTATACCATAGTGCTGAAGGGCTGTGGGGAGCTTCATATAGTGTATCCAAATGGAAGCAAAGCAATTAGCATTGAAATCAAACAAGGGGACGTGTTTGTTGTTCCAAAATCATTCCCCTTATGTCAAATAGCATCAAGGGATGAACCCTTAGAGTTCTTTGGCTTCTCTACCTCTGCCAAAGAGCACAAGCCACTGTTTCTGGCTGGCTCTGTGTCCATTCTTAGGACCATGCTGGGGCCTCAGCTTGCGGCGGCGCTTGGGGTGAGTGTAGACACTTTGCGGCGTGCCCTTGATCCTCAGGATGAGCTTCTGATCTTTCCGTCAACATGGTCTGAACCACCATAA 1272 0.4277 MAIPEGEEDNLFLMHKPKRMVKTDAGEMLVLKTQSGCRRFLDRHMHIAFITMQPNSLFVPHYLDSNLIIFIHKGEANLGFIYDDELVERRLKAGDVYVIPSGSAFYFVNMEEGQRLHIICSIDPSTSLGLDTFHSFYIGGGANSHSLFSEFGPAILETAFNESRMEVESIFYKELDGPIMYMDDSHAPSLGTKFLQLKKEEKEQQLNKMLQDQEEEKEEKKQTSSPWEKLLNNVFGKVNEKTESKNSVYWSKATNLYDKKSDFRNDYGWSKALDGVQYSPLTKPDTGLFYVYLKAGSMLGPHVNPRASEYTIVLKGCGELHIVYPNGSKAISIEIKQGDVFVVPKSFPLCQIASRDEPLEFFGFSTSAKEHKPLFLAGSVSILRTMLGPQLAAALGVSVDTLRRALDPQDELLIFPSTWSEPP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01984 423 CDD cupin_7S_vicilin-like_N 20 190 - -
Vimu5g01984 423 Gene3D Jelly Rolls 258 421 IPR014710 -
Vimu5g01984 423 PANTHER OS03G0336100 PROTEIN-RELATED 11 418 - -
Vimu5g01984 423 Coils Coil 192 223 - -
Vimu5g01984 423 SUPERFAMILY RmlC-like cupins 15 410 IPR011051 -
Vimu5g01984 423 CDD cupin_7S_vicilin-like_C 262 411 - -
Vimu5g01984 423 SMART Cupin_1_3 12 168 IPR006045 -
Vimu5g01984 423 SMART Cupin_1_3 254 403 IPR006045 -
Vimu5g01984 423 Pfam Cupin 255 399 IPR006045 -
Vimu5g01984 423 Pfam Cupin 41 120 IPR006045 -
Vimu5g01984 423 Gene3D Jelly Rolls 5 194 IPR014710 -
Vimu5g01984 423 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01984 Vimu-Chr5 31632072 31634754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01984 46 415 Miscellaneous Gene Families AT2G18540 30.691 1.75e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01984 - - vra:106755871 808.52