Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01980 ATGTTCTCTATGACAAGAAATTTCTTCAAGTATCGTACTTCCTACTTCAGGAGGAATATCCCAAGTGAAACCATACTCTCCACACTCTCATTTTGCCACAAATTTCATGACCCCGATGAGAAATATTTACTGAAGATTGTTTTTTCTCATCACACCCACAAATTTTACCGCACTTCATTCCAAATCAACAGTAGTTGCACTCAATTCCCTGTCCCATTTGCATCCTTTAGTTCTCCCTATTCAACAAAAGCTCCTTCAAGATCTTACCGAAGACGAGCCAGAAATAGGTTGTTGAAGTCCTCCAAGCCTACCCTAGACCAAGCCCAATTTCAGTTGGCACTGTCCCAACTTCCCCCAAGGTTCACTACTGAAGAACTGTGCACTGTGATTGCTCGACAAGATAATCCCTTGGTTTGCTTAGAACTATTTCACTGGGCATCTCAACAGCCACGATTTCGGCATGATGTGTCCACGTTTCATGTCACCATAAAGAAGCTTGGTACGGCAAAGATGTTCCAAGAAATGGATGACATTGTGAACCAACTGATTGCAGTTCCTTTAATTGGTTCAGAGGCATTGTTCAACACAGTTATATATTATTTCACTCAGGCACGGAAGCTTACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAGTAAAAGGAATTTAATTTGCTGTTATAGGCCCTCCATTAGAACCTATAATATTCTTTTTGCTGCATTTTTGGGTAGAGGAAGCAACTCCTATATAAACCATGTGTATATGGAAACAATTAGATGTCTGTTTAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGTTATGTTCTATCTCTTCATGTCAATGATGCATTGAGGATATTCCATCAAATGGGTGTGGTTTATGATTGTCAGCCCAATGCGTTTACATATGATTACTTGATTCATGGCTTGTGTGCCCAGGGCAGAACAAATAATGCCAAAGAATTATTTAATGAAATGAAGACCAAAGGTTTTGTTCCTGGTAGTAAATCTTATAATTCGCTTGTCAACTCGTTGGCGCTTGGTGGAGAGATTGGGGAAGCAGTAAATTATCTGTGGGAGATGACCGATAAGCAAAGGTCACCTGATTTTATTACATGTAGGACTGTACTGGATGAGATATGCAGACAAAGAACAATTCAGGAGGGCATGGGTTTTTTGCAGGAGTTGCAAGAAAATGACCTTGTAGATGGGCATGCTTACAGGAAGCTTCTTTATGTGCTTGAAGATGACTATGGGAATTCAGTAAGTAGAAACAATGGAATTGAGTGA 1320 0.3962 MFSMTRNFFKYRTSYFRRNIPSETILSTLSFCHKFHDPDEKYLLKIVFSHHTHKFYRTSFQINSSCTQFPVPFASFSSPYSTKAPSRSYRRRARNRLLKSSKPTLDQAQFQLALSQLPPRFTTEELCTVIARQDNPLVCLELFHWASQQPRFRHDVSTFHVTIKKLGTAKMFQEMDDIVNQLIAVPLIGSEALFNTVIYYFTQARKLTRAVNVFKHMKSKRNLICCYRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNAFTYDYLIHGLCAQGRTNNAKELFNEMKTKGFVPGSKSYNSLVNSLALGGEIGEAVNYLWEMTDKQRSPDFITCRTVLDEICRQRTIQEGMGFLQELQENDLVDGHAYRKLLYVLEDDYGNSVSRNNGIE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01980 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vimu5g01980 439 PANTHER ATPASE EXPRESSION PROTEIN 3 79 422 - -
Vimu5g01980 439 Pfam PPR repeat 276 300 IPR002885 -
Vimu5g01980 439 Pfam Pentatricopeptide repeat domain 194 241 IPR002885 -
Vimu5g01980 439 Gene3D Tetratricopeptide repeat domain 287 411 IPR011990 GO:0005515
Vimu5g01980 439 Gene3D Tetratricopeptide repeat domain 91 256 IPR011990 GO:0005515
Vimu5g01980 439 Pfam PPR repeat family 308 356 IPR002885 -
Vimu5g01980 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vimu5g01980 439 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Vimu5g01980 439 NCBIfam pentatricopeptide repeat 276 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01980 Vimu-Chr5 31592241 31593560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01980 172 421 Glycosyltransferase AT1G05670 24.314 2.75e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01980 - - var:108340576 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01980 5 31592241 31593560 Vimu5g01980 5 31592241 31593560 ECH