Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01978 ATGGCTTTCTGCTTGACTAACTTAACTATGTTCCTGTTTAAATTGTTCAGAACCAACCCTGTGCAGAGTGTGGAAAGAACATTTCAGCTTACTAGAGCAGACAAAGACTTGGTTTCCAAACAAGAATTTGATGTTGAGGTTGTAGGTTTGGTGTATGCTCCTAAACGACAAGGTTCCATTCAGGATGCAATGGCCGCAATATACAGACCTGCAGGTGTTCCTGTTCGAGCAACTAACAGACCTGGTTCACAGTTGCTTGGAGCTAATGGTCGGGATGATGGCCCAATTATCACGCCATACACAAAAGACGGAATTAATAAGATTTCGTTAACAGGATGCGATGCTCGCATTTTTTGTCTTGGGGTTCGTATTGTTAGAAGGCGCAGCATGCAGCAGATCCTAAACTTAATTCCTAAGGAGTCTGATGGTGAGCTATTTGAAGACGCTCTTGCACGGGTGTGTCGTTGTGTTGGGGGCGGAAACACAGATGGTGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGCTTTGACCTTGAAGTTCTTTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCTATGATGGTAAATTGTGGCGAAGAAACTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGACAAAGGGTGAAAGTGAACGCCAGGAATTAGGGAGTCTAGCACAGTGGCATCTTCCTGATGGATCCCCATGCGTTTCAGCTGATGGAGATTTCAAGAGAGTGGATACATTGGCATTGAAGCAGGTCAAACAGGAAGGGGTTTTTGACACTCCAACTGGTTTAAAACTTGGCATAAGGAAAAATCGCAATGGAGATTGGGAAGTCAGTAAACCTCAGGGCACAAACACATCTTCTGGTAATAAATTGAAAGCGATTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCTACTGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACTATTCCACTGCAAATGGCGTTGAAATGGATTCTCTGTGTCTCAATAATGTTGATTTAGCATATGACTATACTGGACATGGCTCTTCTGCTCAGGTGGCTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGATAATGATCTCTTGGTATCTCCTCCAATTGCATATAGGAACAACCCAAATAATGCTACAGATGGTTATTCTGTACAGCCTCCTGTAATGGTTGATTCGTATGCTGAAGAGCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCCAATGATGATGATTTTGGGATGTCTTCCCTGTGGTCTATGCCTTCTGGAAGGCAGGCTGGTCCTGGATTTCAACTATTTGGATCTGATGCAGATGTATCAGATGCATTGGTCCATCTGCAACACGGTCCTGTGAATTGCTCTTCATCACTAAATGGTTATGCACTAGCTCCTGATACTGCTTTGGGATCTGGCGGTATCTTGCAAGATTCCTCTGCTGGTCGGTTGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTAGCATTTGGTGGTGATGATCCATCACTTCAGATTTTTCTCCCCACTAGACCAGCAGATTCATCCATGCAGAATGAATTGAGAGATCAGGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGACTGGATCTCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAACAATGGTGATACTTCTACTCAAAATGGATTGAATTCTAGACATCAAATCCCAACCAGAGAAGTTGGCACGAATACTTTGGATGATACTGGAAGATTGGGAGCTGGGTATTCAGTTTCTTTGCATCGAGCACTGCTATACCTTCTGTTAAATGCTTCTTTACTCCTTGGGATGAATGATGTCAGAACTGACAGGCCAGGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGGCGTCGCTTGTACCTTTCTATTGATTCAGATTCAGAAGCTACAAGTTACCCTCCCAAAAATGCTCGCACCCACCCCATCGACAAGGATGTTGGTCGTAATGATTCTTTGTGCTTGCTATCTAAATTGTCCTTAGGACATGTTGGTAGACCAAGCTGGAGCTATTATTCCCATCAATTTTCAAAGAGGGTGTGCTGGGGGTATACTGCTGGTTTTATTGTATAG 2319 0.4364 MAFCLTNLTMFLFKLFRTNPVQSVERTFQLTRADKDLVSKQEFDVEVVGLVYAPKRQGSIQDAMAAIYRPAGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRSMQQILNLIPKESDGELFEDALARVCRCVGGGNTDGDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVLWQCPICLKNYALENIIIDPYFNRITSMMVNCGEETTEVEVKPDGSWRVKTKGESERQELGSLAQWHLPDGSPCVSADGDFKRVDTLALKQVKQEGVFDTPTGLKLGIRKNRNGDWEVSKPQGTNTSSGNKLKAIFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGVEMDSLCLNNVDLAYDYTGHGSSAQVAGAEVIVLSDSEEDNDLLVSPPIAYRNNPNNATDGYSVQPPVMVDSYAEEHNLGGNSCLGLFPNDDDFGMSSLWSMPSGRQAGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYALAPDTALGSGGILQDSSAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVANGVCTEEDWISLSLGGGAGGNNGDTSTQNGLNSRHQIPTREVGTNTLDDTGRLGAGYSVSLHRALLYLLLNASLLLGMNDVRTDRPGRQRSDSPFSFPRQRRRLYLSIDSDSEATSYPPKNARTHPIDKDVGRNDSLCLLSKLSLGHVGRPSWSYYSHQFSKRVCWGYTAGFIV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01978 772 ProSiteProfiles Zinc finger SP-RING-type profile. 168 242 IPR004181 GO:0008270
Vimu5g01978 772 MobiDBLite consensus disorder prediction 614 634 - -
Vimu5g01978 772 MobiDBLite consensus disorder prediction 356 381 - -
Vimu5g01978 772 MobiDBLite consensus disorder prediction 616 634 - -
Vimu5g01978 772 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 23 476 - -
Vimu5g01978 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 260 IPR013083 -
Vimu5g01978 772 Pfam MIZ/SP-RING zinc finger 181 220 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01978 Vimu-Chr5 31564992 31570533 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01978 - - gmx:100797252 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00599 4 4429296 4430546 Vimu5g01978 5 31564992 31570533 PCT