Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01971 ATGCATAGGATCGTCACCGCGAGGTCCATTTTTTCTGCTGTTTTCAGAAGCAAACCTCGGCCTCACTCTGCCGCTTTTTCCACATCCTTGCTATTCGACGAAACTCAGATACAGTTTAAAGAAAGTGTTTCTCAGTTTGCAACGGAAAATATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGGGAATTCAATCTCCTTGGGATTACTGCTCCAGAGGAATATGGAGGGCTTGGTCTGGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGCGTCCGTTGGTCTTTCATATGGTGCTCATTCAAACTTGTGTGTCAATCAGCTGGTGAGAAATGGAAGTCCTGCTCAGAAAGAGAAATATTTACCAAAGACTAAACTGTTTTTCTCTCCAAATTTGAAGCTTATTTCTGGGGATCACGTGGGAGCTTTGGCAATGAGTGAGCCCAATTCTGGGTCCGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAACGGGCCAGTTGCTCAAACTTTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCGTTCATTATTGAGAAGGGAATGGCTGGATTCAGTACTGCCCAGAAATTGGACAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAGGGAAAAGGAGTATATGTCATGATGTCTGGGTTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTGGGTATTATGCAGGCATGTCTTGATGTTGTTCTTCCTTATGTTCGTCAAAGAGAGCAGTTTGGTCGTCCCATCGGGGAGTTTCAGTTTATACAGGGAAAAGTTGCTGACATGTATACTGCATTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGAGAATGTGACAATGGAAAGGTTGACCCAAAGGATTGTGCTGGAGCCATACTTTGTGCTGCTGAAAGAGCAACTCAGGTTGCTTTGCAGGCTATACAGTGTTTAGGTGGGAATGGGTACGTGAATGAGTATCCTACTGGTCGTTTCCTGAGAGATGCCAAACTCTACGAGATTGGAGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGCGAGCTCTTCAAGGAGCAATAA 1263 0.4402 MHRIVTARSIFSAVFRSKPRPHSAAFSTSLLFDETQIQFKESVSQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASASVGLSYGAHSNLCVNQLVRNGSPAQKEKYLPKTKLFFSPNLKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMAGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTALQSSRSYVYSVARECDNGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRFLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01971 420 Gene3D - 22 143 IPR037069 GO:0016627|GO:0050660
Vimu5g01971 420 Gene3D - 160 272 IPR046373 GO:0016627
Vimu5g01971 420 Pfam Acyl-CoA dehydrogenase, C-terminal domain 268 416 IPR009075 GO:0016627
Vimu5g01971 420 Pfam Acyl-CoA dehydrogenase, middle domain 161 256 IPR006091 GO:0016627
Vimu5g01971 420 PIRSF PIGM 28 124 - -
Vimu5g01971 420 PIRSF PIGM 169 420 - -
Vimu5g01971 420 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 163 175 IPR006089 GO:0003995
Vimu5g01971 420 Gene3D - 273 416 - -
Vimu5g01971 420 PANTHER ACYL-COA DEHYDROGENASE 31 419 - -
Vimu5g01971 420 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 25 146 - -
Vimu5g01971 420 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 279 IPR009100 GO:0016627
Vimu5g01971 420 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 375 394 IPR006089 GO:0003995
Vimu5g01971 420 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 266 418 IPR036250 GO:0016627
Vimu5g01971 420 FunFam isovaleryl-CoA dehydrogenase, mitochondrial 274 418 - -
Vimu5g01971 420 CDD IVD 32 418 IPR034183 GO:0003995
Vimu5g01971 420 Pfam Acyl-CoA dehydrogenase, N-terminal domain 34 142 IPR013786 GO:0016627|GO:0050660
Vimu5g01971 420 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 160 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01971 Vimu-Chr5 31522071 31528657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01971 1 420 Acyl Lipid Metabolism Gene Families AT3G45300 82.381 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01971 K00253 - gmx:100794259 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01971 5 31522071 31528657 Vimu5g01971 5 31522071 31528657 ECH