LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01966	ATGGTATGTGCAAGTTTTTCCTTGAGTCCTAGAGAGAAAAGTGGGCCAATACGCATAGGGGTAACAGATGCGTGCTTGATAGACACAAGGACCAACGCCGTCGCGCTTTTGACCCTCACCGCACTAACTGGTAACACGGCGGTGGGCCTCTGCGAGGCACAGCTTCACTTCAGCTTCAATTGGGAAGGTTATTTCTGTAAAACTGGTTTAGGAATTGTGAAGCACTTTCTGATCCTTACTAAACACATGGATACTGGTGCCATTGGAGATCTGGTTGACAAGCTCAAGGCTATGCAGAATGACAATGTAGAGGATAAAGATGAATATGATGATGTTGATGACGATGATGAAGAAGAAGAACATGAACCCATCACACTTGGCTTTGTTGACAAGCCAAAGAATAAATGGTCTCTTCAACGTCAATATTTCCCAAGCAAAGCTGGAGGAGTCCCTGCTTGGCTTGACCCTTTGAATATACCATCACAGGGATCATTTGTGTGTGACATTTGTGGAGACCCTTTACAATTCTTACTTCAGGTTTATGCACCAACTGAGCAGGAAACTGCATTTCACCGAATGTTGTATGTTTTTATGTGTCCCTCTATGAAATGCCTCCTCAGGGATCAACACGAGCAATGGAAACACCATCCAGAGAAGCCATCTAGAAGTGTGAAGGTCTTCCGTTGTCAATTACAACGTGTTAATCCATTTTATTCTCAAGAATGCCCTCAGTATAATGAGAGTCACAAACCTGCTGGCTGTGGAGCTGTTCTTTGTGATTGGTGTGGCACTTGGAAGGGAGACAAGCTTTGTAGTAGATGCAGACAGACACGGTATTGCTCTGAGAAGCACCAGGCTATGAGTTGGCGCGCAGGACATAAAATTGTTTGCCCTCAGATACAAATTTCTTCGCCTGTTTCTGGATCCAACAAAAGTGGAGCAACCTTGCTCGAGTCACATAAAGGTGGAAGCAAGAATCTATGGCCTGAATTTGAGATCACCATTGAAGATGAAAGTGAATATAATAGAGACATGTCTGAGGAAAATGAGCTGTCTAATTCCTTGATCTCAAGGAACAGGACTGCTGACACAATGAATTCGATTTTTGATAGCTTTCAGGGTGACGCTGACAAAAAGAGTTGGGCCTCCTTCCAGGAATGCATCGACAAGGCCCCTGAACAAGTGCTAAGGTATTATAGAAATACTAATGCTAAGCCAATATGGCCTCTTTCAAGTGGTCGGCCATCAAATGCTGATATACCTAGATGTAGTTACTGCAGCGGACCTATGTGTTGTGAATTTCAGATTTTGCCACAGCTGCTTTATTACTTCGGTGTTGACAATGAAGTGGACTCTCTGGATTGGGCTTCAATTGTGGTGTATGCATGTGAAGCCTCTTGCAATGCAAGTTTGCCTTACAAACATGAATTTGCCTGGAAGTTTGAAGTAGGTATACCTACTTCAACCATCGATTTTGAGGATTGA	1485	0.4357	MVCASFSLSPREKSGPIRIGVTDACLIDTRTNAVALLTLTALTGNTAVGLCEAQLHFSFNWEGYFCKTGLGIVKHFLILTKHMDTGAIGDLVDKLKAMQNDNVEDKDEYDDVDDDDEEEEHEPITLGFVDKPKNKWSLQRQYFPSKAGGVPAWLDPLNIPSQGSFVCDICGDPLQFLLQVYAPTEQETAFHRMLYVFMCPSMKCLLRDQHEQWKHHPEKPSRSVKVFRCQLQRVNPFYSQECPQYNESHKPAGCGAVLCDWCGTWKGDKLCSRCRQTRYCSEKHQAMSWRAGHKIVCPQIQISSPVSGSNKSGATLLESHKGGSKNLWPEFEITIEDESEYNRDMSEENELSNSLISRNRTADTMNSIFDSFQGDADKKSWASFQECIDKAPEQVLRYYRNTNAKPIWPLSSGRPSNADIPRCSYCSGPMCCEFQILPQLLYYFGVDNEVDSLDWASIVVYACEASCNASLPYKHEFAWKFEVGIPTSTIDFED	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01966	494	ProSiteProfiles	Zinc finger MYND-type profile.	259	297	IPR002893	-
	Vimu5g01966	494	Pfam	Programmed cell death protein 2, C-terminal putative domain	379	479	IPR007320	GO:0005737
	Vimu5g01966	494	Gene3D	-	237	302	-	-
	Vimu5g01966	494	PANTHER	PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED	100	480	-	-
	Vimu5g01966	494	SUPERFAMILY	HIT/MYND zinc finger-like	256	300	-	-
	Vimu5g01966	494	Pfam	MYND finger	259	297	IPR002893	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01966	Vimu-Chr5	31464264	31469020	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01966	K14801		-	gmx:100818325	686.026