Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01963 ATGAAAGTGGCAAAGATTCTGTTGGTTCTGATTTGGTTCTTCTGCATTTATGTCTCTACTTCGTTTTCCGCAAATGTCACTTACGACCATAGAGCATTGGTCATTGATGGCAAGCGCCGAGTCTTGGTCTCTGGTTCTATCCATTACCCTCGTAGCACTCCAGAGATGTGGCCAGACATCATTCAAAAGTCCAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCAAGGCCAGTATAATTTTGAAGGCAGGGCAGATTTGGTTAAATTTGTGAAGACAGTAGCAGCAGCAGGCCTATACGTGCATCTCCGGATTGGTCCATACGCATGTGCTGAATGGAACTATGGCAGCGGTTTCCCTCTTTGGCTACATTTTATACCGGGAATTCAGTTCCGAACTGATAACAAACCATTTGAGGCAGAAATGCAGCGGTTCACTGCTAAGATCGTGGATATGATGAAGCAGGAGAACCTCTATGCATCACAGGGAGGACCAATTATTTTGTCTCAGGTCGAAAATGAATATGGAAACATTGATGCGGCCTATGGTTCTGCTGCTAAATCCTACATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGTCAACAGGAAGATGCTCCTGACCCAATTACCAGTGGAAGATCTTGCTTTTGCTGTGGCACGCTTTTACCAGCTAGGTGGAACTTTTCAGAATTACTATATGGATTTAAGCTATTCAAGATAGGAAAAGAGCTGATGCCACAACTTTTTCTGTTGCCTGCTCGGAAACAGTACCATGGAGGGACTAATTTTGGCCGAAGTGCTGGTGGACCTTTCATTTCTACTAGTTATGATTATGATGCTCCAATTGATGAGTACGGAACTATTAGACAGCCTAAGTGGGGCCACCTTAAGGACTTGCATAAGGCCATTAAACTTTGTGAAGAAGCACTGACAGCTACTGATCCAACTATTACATCTCTTGGACCAAATATAGAGGCTGCAGTTTACAAGACAGGATCTGCCTGTGCTGTCTTCCTTGCCAACAACGATGGCACATCTGATGCAAATGTGACCTTCAATGGAAATTCATATGACCTGCCAGCGTGGTCTGTCAGCATCTTACCAGACTGCAGGAATGTAGTGCTTAATACTGCAAAGATAAGTTCTGTATCTACAATTTCAAGCTTCACAACTGAATCTTTAAAAGAAGAGATTGGTTCTTCGGATGATTCTTGCTCAGGATGGAGTTGGATTAGTGAACCTGTTGGCATTTCAAAGGCTGATTCATTCTCAAAAATTGGGCTAGTGGAGCAAGTAAACACAACTGGTGATAGAAGTGATTACTTGTGGTACTCAATAAGCATCGATCTTGATGCTGGTACTCAAGCGGTCCTTCACATTGAATCTCTTGGTCATGCTCTTCATGCTTTCATAAATGGGAAGCTTGCAGGGCCTGGCAAAGAAGCATTTCTCTCTCCCTACCCCACCCTTCTTAAACTCAATGCTACTTTATTAGAAAATGCTGCAAATGGAACGGGAAACAATGTCAAAGTAGACATCCCTGTCACACTAGTGGCTGGGAAGAACACAATTGATTTACTGAGTTTAACTGTTGGGCTCAAGAACTACGGAGCATTTTTTGACACAGCGGGTGCAGGAATCACTGGCCCTGTGATACTGAAAAGTTTGACAGATGGTAACTCTCTTGATCTGTCCTCCCAGAATTGGACATATCAGATAGGTCTTAAAGGTGAAGATTTGGGGCCATCTAGTGGCAGTTCTGGCCAGTGGAATTCACAATCTACTTTACCGACAAACCAAACATTGATTTGGTACAAGACAAACTTTGTTGCCCCCTCTGGTAGTGATCCAGTTGCAATTAACATGACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGAAGGTACTGGCCTACATATGCTTCTCCAAGTGATGGTTGTACTGATTCCTGCAATTATAGAGGGGCCTATCAAGCATCCAAATGTCTCAAGAACTGTGGAAAGCCATCACAAACATTATACCATGTACCACGATCATGGTTACAACCTGAAAACAACACACTTGTTTTGTTTGAGGAAATTGGAGGCAACCCTGAGCAAATCACTTTTGCTACAAAACAGATTGCAAGTGTGTGTTCTCATGTATCTGAATCTCACCCTCCTCATGTAGACTTGTGGAATTCAGATGCAGAATCAGGAAGAACAGTAGGGCCTGTACTGTTGCTGGAATGCCCTTATCCTAATCAGGTGATCTCCTCCATTAAATTTGCAAGTTTTGGAACACCTCATGGGACTTGTGGAAACTTTAAACATGGAAACTGCAGTAGCAATAAGGCTCTATCCGTTGTGCAGAAGGGCTGCATTGGATCAAGCAGTTGTAGAATTGAACTATCAATTAATACATTCGGAGATCCATGTGAAGGAATAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 2529 0.4318 MKVAKILLVLIWFFCIYVSTSFSANVTYDHRALVIDGKRRVLVSGSIHYPRSTPEMWPDIIQKSKDGGLDVIETYVFWNLHEPVQGQYNFEGRADLVKFVKTVAAAGLYVHLRIGPYACAEWNYGSGFPLWLHFIPGIQFRTDNKPFEAEMQRFTAKIVDMMKQENLYASQGGPIILSQVENEYGNIDAAYGSAAKSYIKWAASMATSLDTGVPWVMCQQEDAPDPITSGRSCFCCGTLLPARWNFSELLYGFKLFKIGKELMPQLFLLPARKQYHGGTNFGRSAGGPFISTSYDYDAPIDEYGTIRQPKWGHLKDLHKAIKLCEEALTATDPTITSLGPNIEAAVYKTGSACAVFLANNDGTSDANVTFNGNSYDLPAWSVSILPDCRNVVLNTAKISSVSTISSFTTESLKEEIGSSDDSCSGWSWISEPVGISKADSFSKIGLVEQVNTTGDRSDYLWYSISIDLDAGTQAVLHIESLGHALHAFINGKLAGPGKEAFLSPYPTLLKLNATLLENAANGTGNNVKVDIPVTLVAGKNTIDLLSLTVGLKNYGAFFDTAGAGITGPVILKSLTDGNSLDLSSQNWTYQIGLKGEDLGPSSGSSGQWNSQSTLPTNQTLIWYKTNFVAPSGSDPVAINMTGMGKGEAWVNGQSIGRYWPTYASPSDGCTDSCNYRGAYQASKCLKNCGKPSQTLYHVPRSWLQPENNTLVLFEEIGGNPEQITFATKQIASVCSHVSESHPPHVDLWNSDAESGRTVGPVLLLECPYPNQVISSIKFASFGTPHGTCGNFKHGNCSSNKALSVVQKGCIGSSSCRIELSINTFGDPCEGIAKSLAVEASCA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01963 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Vimu5g01963 842 ProSiteProfiles SUEL-type lectin domain profile. 756 842 IPR000922 GO:0030246
Vimu5g01963 842 Gene3D Glycosidases 19 250 - -
Vimu5g01963 842 Gene3D - 274 397 - -
Vimu5g01963 842 SUPERFAMILY Galactose-binding domain-like 586 750 IPR008979 -
Vimu5g01963 842 Gene3D - 572 735 - -
Vimu5g01963 842 SUPERFAMILY Galactose-binding domain-like 382 573 IPR008979 -
Vimu5g01963 842 FunFam Beta-galactosidase 273 400 - -
Vimu5g01963 842 Pfam Beta-sandwich domain in beta galactosidase 331 398 IPR041392 -
Vimu5g01963 842 FunFam Beta-galactosidase 22 251 - -
Vimu5g01963 842 Pfam Galactose binding lectin domain 764 841 IPR000922 GO:0030246
Vimu5g01963 842 CDD Gal_Rha_Lectin_BGal 759 841 - -
Vimu5g01963 842 Gene3D - 757 842 IPR043159 -
Vimu5g01963 842 SUPERFAMILY (Trans)glycosidases 25 325 IPR017853 -
Vimu5g01963 842 Gene3D - 401 571 - -
Vimu5g01963 842 FunFam Beta-galactosidase 594 734 - -
Vimu5g01963 842 Pfam Glycosyl hydrolases family 35 33 230 IPR031330 -
Vimu5g01963 842 Pfam Glycosyl hydrolases family 35 275 320 IPR031330 -
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 288 304 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 268 283 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vimu5g01963 842 PANTHER BETA-GALACTOSIDASE RELATED 18 772 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01963 Vimu-Chr5 31431812 31437400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01963 23 695 Glycoside Hydrolase AT2G28470 65.808 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01963 - - gmx:100793198 1347.8