Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01962 ATGATGAAACAACAATATGTCTTGTCCTTCTCACTAGCACTTCTACTTTCATTTCTGTATTCCACTACCACTTTAGCCCAATTATCACCAGCTTCTGCCCCTCTTAAACCAGTTCAACCTACTCCTACTCCACCAGCTGAGGCTCCTAAACAGCCATTGGTTCCTTCATTGCCACAGTCACCAAGTGATGCCACTCCCGACACTCCAGCTGTTGACATTGTTGGAATCCTGAGGCAGGCCAAGTCATTCAACATCCTTATCCGCCTCATGAAAACCACCCAATTGATCAACCAACTCAATGCACAGCTCCTCACCACTAAGTCAGGTGGCATCACCATTCTTGCACCTGATGACAGTTCCTTCTCTCAACTCAAACCAGGCTTCCTCAACTCTCTTTCCGATGGCCAAAAGCTCGAGCTCTTACAGTTCCATGTTTTGTCAGACTATGTTTCTAGCTCCAACTTTGATACTCTAACCAACCCTGTGAGAACACTTGCAGGAGCTAAACCTGGAAAGGTGGAACTGAACGTGATAAGTTACGGTGGGAGTGTGAACATCTCAACGGGTGAGGTTAACACCACCATCACTGGCATTGTATACACAGATAAACATCTTGCTATTTACAAGGTGGGTAAGGTACTTCTTCCTATGGACTTCTTTGCTGTTGCTAAGACACCTGCAAAGGCACCCTCATTGGCTCCAGAACCATCAGCAAAGGCTCCTAAAGCGGATAAGGAGAAGTCAATTTCTCCAGACTCTTCAGATTCATCCGAGACTAGTTCCACAAAAGAGAATTCTGGAACTATGAAAATCCACATGCATGGAAAGTCGGTTTTCCTTGTTCTTGGACTAGTTTTTGTGACTGCATTGTCTTCGTAG 879 0.4528 MMKQQYVLSFSLALLLSFLYSTTTLAQLSPASAPLKPVQPTPTPPAEAPKQPLVPSLPQSPSDATPDTPAVDIVGILRQAKSFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDSSFSQLKPGFLNSLSDGQKLELLQFHVLSDYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIVYTDKHLAIYKVGKVLLPMDFFAVAKTPAKAPSLAPEPSAKAPKADKEKSISPDSSDSSETSSTKENSGTMKIHMHGKSVFLVLGLVFVTALSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01962 292 MobiDBLite consensus disorder prediction 32 66 - -
Vimu5g01962 292 MobiDBLite consensus disorder prediction 229 268 - -
Vimu5g01962 292 FunFam Fasciclin-like arabinogalactan protein 11 56 216 - -
Vimu5g01962 292 MobiDBLite consensus disorder prediction 35 56 - -
Vimu5g01962 292 ProSiteProfiles FAS1/BIgH3 domain profile. 70 214 IPR000782 -
Vimu5g01962 292 Pfam Fasciclin domain 82 216 IPR000782 -
Vimu5g01962 292 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7 270 IPR045003 -
Vimu5g01962 292 SMART fasc_3 112 217 IPR000782 -
Vimu5g01962 292 Gene3D FAS1 domain 56 216 IPR036378 -
Vimu5g01962 292 MobiDBLite consensus disorder prediction 253 268 - -
Vimu5g01962 292 SUPERFAMILY FAS1 domain 64 217 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01962 Vimu-Chr5 31424407 31425285 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01962 - - gmx:100776667 432.18