Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01961 ATGAAACAAGCAACCATTTTCTCTTTATCAATGTTCCTACTCTTTTGGTCTACTACCTTGGCCATTTCACCAGCACCTGCAGCAGCCCCAAAAGCCCCAGCAGCAAAAACTCCCCATACCCCAAAGGCTGCAGCACCATCACCAAAACCATTAGTCCCCACATTACCTCAGTCTCCAGACTCCCCTGACTCTGTCCCTGATGACATCACCAGAATCCTCAAAAAGGCCAAAATGTTCTCAACCCTCATTCGCCTCCTCAAAACTACAGAAATCATCAACAACGTCAACTCACAGCTCATAACAGCTAAGACTGGGGGTATAACCATTCTTGCACCAGATGATTCTGCCTTTTCAAACCTCAAAGCTGGCTTCCTCAATTCCCTCAACGAAGGCCAGAAAATTGAACTTGTCCAGTTCCATATATTGCCAGAGTATGTGTCAAGCTCAAACTTTGATTCTCTGAGCAACCCTGTACAGACAGTGGCTGGTAAAGACCCTGTAAGGCTTCCACTGAACGTGAATGCATTAGGTAACAGTGTCAACATTTCAACTGGAGTCGTCAATGCCACCATTCTTGGGGTAGTATACTCTGATAACAAACTTGGGATTTATCACGTCGACAAGGTGCTTCTTCCTCTAGATTTCTTTGCAACCAGTAAGGCTCCAGCGTTGGCTCCTTCATCTCTTGCAAAGCCTCCCTAA 702 0.4587 MKQATIFSLSMFLLFWSTTLAISPAPAAAPKAPAAKTPHTPKAAAPSPKPLVPTLPQSPDSPDSVPDDITRILKKAKMFSTLIRLLKTTEIINNVNSQLITAKTGGITILAPDDSAFSNLKAGFLNSLNEGQKIELVQFHILPEYVSSSNFDSLSNPVQTVAGKDPVRLPLNVNALGNSVNISTGVVNATILGVVYSDNKLGIYHVDKVLLPLDFFATSKAPALAPSSLAKPP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01961 233 Gene3D FAS1 domain 54 212 IPR036378 -
Vimu5g01961 233 MobiDBLite consensus disorder prediction 29 66 - -
Vimu5g01961 233 SMART fasc_3 108 213 IPR000782 -
Vimu5g01961 233 Pfam Fasciclin domain 78 212 IPR000782 -
Vimu5g01961 233 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 230 IPR045003 -
Vimu5g01961 233 SUPERFAMILY FAS1 domain 49 213 IPR036378 -
Vimu5g01961 233 FunFam Fasciclin-like arabinogalactan protein 11 54 212 - -
Vimu5g01961 233 ProSiteProfiles FAS1/BIgH3 domain profile. 66 210 IPR000782 -
Vimu5g01961 233 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01961 Vimu-Chr5 31421882 31422583 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01961 - - pvu:PHAVU_011G074500g 348.206