Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01945 ATGAGAGCGACACGTATTCTGTTTGTTTTGCTTTGGTTCTTCTGCATTTATTATCCTCCTGCGTTTTGCGCAAATGTCACGTATGACCACAGAGCATTGGTCATTGATGGCAAGCGCCGTGTCTTGGTCTCTGGTTCTATTCATTACCCTCGTAGCACTCCAGAGATTTGGCCAGACCTCATTCAGAAATCCAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCAGGGCCAGTATAATTTTGAAGGTAGGGCAGATTTGGTTAAATTTGTGAAGGCAGTAGCAGCAGCAGGTCTATATGTGCATCTCCGGATTGGTCCATACGCATGTGCTGAATGGAACTATGGCGGTTTCCCTCTTTGGCTACATTTTATTCCGGGAATTCAGTTCCGAACTGATAACAAACCATTTGAGGCAGAAATGCAGCGGTTCACTGCTAAGATCGTGGATATGATGAAGCAGGAGAACCTCTATGCATCACAGGGAGGACCAATTATTTTGTCTCAGGTCGAAAATGAATATGGAAACATTGACGCAGCCTATGGTTCTGCTGCTAAATCCTACATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGTGTTCCTTGGGTAATGTGCCAACAGGCAGACGCTCCTGACCCAATTATTAACACATGCAATGGATTTTACTGCGATCAATTCAAACCAAACTCTAACTCGAAACCAAAAATGTGGACCGAGAACTGGAGTGGATGGTTTCTTTCGTTTGGTGGTGCTGTGCCTTACAGGCCAGTGGAAGATCTTGCTTTTGCTGTAGCACGCTTTTACCAGCGAGGTGGAACTTTTCAGAATTACTATATGTACCATGGAGGGACTAATTTTGGCCGAACTACCGGTGGACCTTTCATTTCTACTAGTTATGATTATGATGCTCCAATTGATGAGTATGGAATTATTAGGCAGCCAAAGTGGGGACACCTTAAAGATGTGCATAAGGCCATAAAGCTTTGTGAAGAAGCACTGATAGCGACTGATCCAACAATTACAACTCCTGGACCAAATATAGAGGCTGCAGTTTACAAGACGGGATCTGCATGTGCAGCCTTCCTTGCCAACATTGCCACATCTGATGCAACAGTGTCCTTTAACGGAAATTCCTATCACTTGCCTGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGTGCTCAATACTGCAAAGATTAATTCTGCATCTATGATTTCAAGCTTCAGAACTGAATCCTTAAAAGAAGAGGTTAGTTCTGCCTCAGGATGGAGTTGGATTAGTGAACCCGTCGGTATTTCAAAGGATGATTCATTCTCCAAATTTGGATTACTGGAGCAAATAAATACAACCGCTGATAAAAGTGATTATTTGTGGTACTCGTTAAGCATTGATATGGAAGATGATGCTGGTTCTCAAACTGCCCTTCACATTGAATCCCTTGGTCATGCCCTACATGCTTTCATAAATGGGAAGCTTGCAGGGAGTGGAACTGGCAACAGTAACAAAGCTAAGGTCGCAGTAGACATCCCCATCCAACTAGTGGCTGGGAAGAACATAATTGATCTTCTGAGTTTAACAGTGGGACTTCAGAACTATGGAGCCTTTTTTGACACATGGGGTGCGGGGATCACTGGTCCCGTGATATTGAAAGGTTTGAAGAATGGAAGCACTGTTGATCTCTCCTCCCAACAGTGGACATATCAGGTTGGCCTTAAAGGTGAAGATTTAGGTCCATCAAGTGGAAGTTCTGGACAGTGGAATTCACAATCTGATTTACCTATAAATCAACCCTTGACTTGGTACAAGACAAACTTTGTTGCTCCCTCGGGAAGTGATCCAGTTGCTATTGACTTCACGGGGATGGGAAAAGGTGAAGCTTGGGTGAATGGACAGAGCATTGGGCGATACTGGCCTACATTTGTCTCTCCAAATGGTGGTTGTGCTGACTCTTGCAATTATAGAGGGGCTTATAGTTCATCCAAATGTCTCAAGAACTGTGGGAAACCATCACAGACGTTATACCATGTACCAAGATCATGGTTACAACCAGATACCAACACACTTGTATTGTTTGAGGAAAGTGGAGGTGACCCTATGCAAATCTCTTTTGCTACAAAACAGATAGGAAGCGTGTGTTCACATGTATCTGAATCTCACCCTCCACCTGTAGACTTGTGGAATTCAGAAACAAAAGTAGGGCCTGTACTGTCACTGGAGTGCCCTTATCCTAATCAGGTGATCTCTTCCATTGAATTTGCAAGTTTTGGAACGCCTTATGGGACTTGTGGAAACTTCAAACATGGACGGTGCAGAAGTAATAAGGCTCTATCCATTGTTCAGAAGGCCTGCATTGGATCAAATAGTTGTAGCATTGGATTATCACTTAATACATTTGGAGATCCATGTAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 2496 0.4343 MRATRILFVLLWFFCIYYPPAFCANVTYDHRALVIDGKRRVLVSGSIHYPRSTPEIWPDLIQKSKDGGLDVIETYVFWNLHEPVQGQYNFEGRADLVKFVKAVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFEAEMQRFTAKIVDMMKQENLYASQGGPIILSQVENEYGNIDAAYGSAAKSYIKWAASMATSLDTGVPWVMCQQADAPDPIINTCNGFYCDQFKPNSNSKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVARFYQRGGTFQNYYMYHGGTNFGRTTGGPFISTSYDYDAPIDEYGIIRQPKWGHLKDVHKAIKLCEEALIATDPTITTPGPNIEAAVYKTGSACAAFLANIATSDATVSFNGNSYHLPAWSVSILPDCKNVVLNTAKINSASMISSFRTESLKEEVSSASGWSWISEPVGISKDDSFSKFGLLEQINTTADKSDYLWYSLSIDMEDDAGSQTALHIESLGHALHAFINGKLAGSGTGNSNKAKVAVDIPIQLVAGKNIIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSTVDLSSQQWTYQVGLKGEDLGPSSGSSGQWNSQSDLPINQPLTWYKTNFVAPSGSDPVAIDFTGMGKGEAWVNGQSIGRYWPTFVSPNGGCADSCNYRGAYSSSKCLKNCGKPSQTLYHVPRSWLQPDTNTLVLFEESGGDPMQISFATKQIGSVCSHVSESHPPPVDLWNSETKVGPVLSLECPYPNQVISSIEFASFGTPYGTCGNFKHGRCRSNKALSIVQKACIGSNSCSIGLSLNTFGDPCKGVAKSLAVEASCA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 611 625 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 638 654 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Vimu5g01945 831 Pfam Galactose binding lectin domain 753 830 IPR000922 GO:0030246
Vimu5g01945 831 Gene3D - 742 831 IPR043159 -
Vimu5g01945 831 FunFam Beta-galactosidase 290 415 - -
Vimu5g01945 831 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Vimu5g01945 831 SUPERFAMILY Galactose-binding domain-like 579 744 IPR008979 -
Vimu5g01945 831 FunFam Beta-galactosidase 587 727 - -
Vimu5g01945 831 Gene3D Glycosidases 21 341 - -
Vimu5g01945 831 Gene3D - 413 565 - -
Vimu5g01945 831 CDD Gal_Rha_Lectin_BGal 743 830 - -
Vimu5g01945 831 Gene3D - 568 727 - -
Vimu5g01945 831 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Vimu5g01945 831 ProSiteProfiles SUEL-type lectin domain profile. 745 831 IPR000922 GO:0030246
Vimu5g01945 831 FunFam Beta-galactosidase 21 341 - -
Vimu5g01945 831 Pfam Beta-sandwich domain in beta galactosidase 345 414 IPR041392 -
Vimu5g01945 831 FunFam Beta-galactosidase 416 566 - -
Vimu5g01945 831 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Vimu5g01945 831 FunFam Beta-galactosidase 743 831 - -
Vimu5g01945 831 SUPERFAMILY Galactose-binding domain-like 398 567 IPR008979 -
Vimu5g01945 831 PANTHER BETA-GALACTOSIDASE RELATED 18 761 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01945 Vimu-Chr5 31323442 31328739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01945 21 688 Glycoside Hydrolase AT2G28470 76.583 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01945 - - gmx:100793198 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01945 5 31323442 31328739 Vimu5g01945 5 31323442 31328739 ECH