Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01944 ATGACGATGCAAAAGCAATCTCTCTTCTCCTTCTCACTAGCACTGCTAGTTTCATTTTTGTATTTCACCAACTCTTCAGCTCAGTTATCTCCGGCTGCTTCCCCTCTAAAACCACCCCAATCTACCCCTACACCACCAGCTGCAGCCCCTAAACCATTGGTTCCCTCGTTGCCAGAGTCACCAAGTGATGCAACCCCTGACACTGCAGCAGCTGTTGACATTGTTGGAATCCTGAGGCAGGCTAAGTCCTTCAACATCCTTATCCGTCTCATGAAAACCACTCAATTGATCAACCAACTCAATGCACAGCTCCTCACCACTAAGTCAGGTGGCATCACCATTCTTGCACCTGATGACAGTTCCTTCTCTGAACTCAAAGCAGGCTTCCTCAACTCTCTTTCTGATGGCCAAAAGCTCGAGCTCTTACAGTTCCATGTTCTTTCAGAGTATGTGTCTAGCTCCAACTTTGATACTTTAACCAACCCTGTGAGAACACTTGCAGGAGCTAAACCTGGAAAGGTGGAACTGAATGTGATAAGTTATGGAGGGAGTGTGAACATCTCAACAGGGGAGGTTAACACCACCATCACTGGCATTGTATACACAGATAAGCATCTTGCTATTTATAAGGTAGGAAAAGTGCTTCTTCCTATGGACTTCTTTACAGTGGCCAAGGCACCTGCAAAGTCACCCTCTTTGGCACCAGAACCATCTGCAAAGGCTCCTAAAGCAGATAAGGAAAATTCACTGTCCCCAGACTCCTCAGAATCATCTCAGATTAATTCCACAAAGGATAACTCTGGCACAGTGAAAACCAATGTGTATGGAAAGTGGCTGTCCCTTGTTCTTGGAGTAGTTCTCGTGACTGTTTTCTCATCATAA 882 0.4569 MTMQKQSLFSFSLALLVSFLYFTNSSAQLSPAASPLKPPQSTPTPPAAAPKPLVPSLPESPSDATPDTAAAVDIVGILRQAKSFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDSSFSELKAGFLNSLSDGQKLELLQFHVLSEYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIVYTDKHLAIYKVGKVLLPMDFFTVAKAPAKSPSLAPEPSAKAPKADKENSLSPDSSESSQINSTKDNSGTVKTNVYGKWLSLVLGVVLVTVFSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01944 293 MobiDBLite consensus disorder prediction 36 59 - -
Vimu5g01944 293 FunFam Fasciclin-like arabinogalactan protein 11 56 217 - -
Vimu5g01944 293 Pfam Fasciclin domain 83 217 IPR000782 -
Vimu5g01944 293 Gene3D FAS1 domain 57 217 IPR036378 -
Vimu5g01944 293 MobiDBLite consensus disorder prediction 32 65 - -
Vimu5g01944 293 SUPERFAMILY FAS1 domain 70 218 IPR036378 -
Vimu5g01944 293 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7 282 IPR045003 -
Vimu5g01944 293 MobiDBLite consensus disorder prediction 251 266 - -
Vimu5g01944 293 SMART fasc_3 113 218 IPR000782 -
Vimu5g01944 293 MobiDBLite consensus disorder prediction 229 266 - -
Vimu5g01944 293 ProSiteProfiles FAS1/BIgH3 domain profile. 71 215 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01944 Vimu-Chr5 31319571 31320866 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01944 - - gmx:100790242 407.912