Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01939 ATGAATCCCGTCGAATCATGTGGCGTATCCGAGATCCGGTCCTTCTCCCCACTTGCAGATGATTCTGTCTCTGAAGCCGGAAAACAGATAAAGAAAATTGCTGATTTTCTGGTATTGCGAGAATCTAAAATCTTTGTTGCCACAACTCTATTTACTATTTTAATTGAAGTTCATATATTTGATGGAAAGAATACAGAGATGGAGTTTGGTGGCATGTACTTTGTGGCTGAGGATGAAGAGAAAGGGAATAATAGCTTTGTGGAATTGGATACAAGGGTAGGAGGTAATGATGGTTTTCCTAGAATTGGACCAAATGATTCGCTTCTCCCTGGGCTTTTTGATGATGTTGCGCTAAACTGTCTTGCATGGGTTAGTAGATCTGATTATGCTTCACTAGCATGTATAAATAAAAGGTACAACATGTTGATTAGGAGTGGGTATCTATCCGGGTTGAGGAAGAAGTTGGGGATTGTGGAGCTTGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGGTGGGAGGCATTTGACCCCAAGAGAAATAGATGGATAACATTACCTAAAATACCTTGTGATGAGTGTTTTAATCATGCAGACAAGGAGTCCTTGGCTGTGGGGAGTGAATTGTTGGTATTTGGTCGGGAATTGATGGATTTTGCTATTTGGAAGTACAGCTTGGTTTGCCGTGGTTGGGTGAAGTGTCAGGAGATGAACCGACCTCGGTGCTTGTTCGCATCTGGCAGTCTTGGTTCGATTGCTATTGTTGCTGGTGGAAGTGATAAATATGGAAATGTTCTTGAATCCGCTGAGTTGTATGACTCTTCTTCAGGTACATGGGAACTGTTGCCGAACATGCACACACCACGTAGATTGTGCTCTGGTTTTTTCATGGATGGCAAGTTCTATGTGATCGGTGGCATGTCAAGTCCTACTGTTTCATTGACTTGTGGGGAGGAGTATGATCTTAAGACAAGAAACTGGCGGAAAATAGAGGGTATGTATCCATATGTTAATGGGGCTGCTCAGGCTCCTCCACTTGTGGCAGTTGTGGATAATGAGTTATACGCAGTTGAGCATCTTACCAACATGGTGAAGAAATATGACAAGGAAAATAACAGTTGGAGTGAATTGGGAAGACTTCCAGTTCGGGCCGATTCTTCAAATGGATGGGGCCTGGCTTTCAAGGCTTGTGCAGAGAAGCTTCTGGTTGTGGGTGGGCAAAGGGGTCCAGAAGGTGAAGCTGTTGTACTGAACTCATGGTGTCCTAGGACAGGGGTCAGGAATGGAACCATAGATTGGCAAGTACTTGGTGTTAAGGAGCATGTTGGGGTGTTTGTTTACAATTGTGCGGTTATGGGATGGTCTGGTGAGATGCTTCTTGATTGA 1386 0.4372 MNPVESCGVSEIRSFSPLADDSVSEAGKQIKKIADFLVLRESKIFVATTLFTILIEVHIFDGKNTEMEFGGMYFVAEDEEKGNNSFVELDTRVGGNDGFPRIGPNDSLLPGLFDDVALNCLAWVSRSDYASLACINKRYNMLIRSGYLSGLRKKLGIVELEHLVYLVCDPRGWEAFDPKRNRWITLPKIPCDECFNHADKESLAVGSELLVFGRELMDFAIWKYSLVCRGWVKCQEMNRPRCLFASGSLGSIAIVAGGSDKYGNVLESAELYDSSSGTWELLPNMHTPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYDLKTRNWRKIEGMYPYVNGAAQAPPLVAVVDNELYAVEHLTNMVKKYDKENNSWSELGRLPVRADSSNGWGLAFKACAEKLLVVGGQRGPEGEAVVLNSWCPRTGVRNGTIDWQVLGVKEHVGVFVYNCAVMGWSGEMLLD 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01939 461 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 105 453 - -
Vimu5g01939 461 Pfam Kelch motif 240 285 IPR006652 GO:0005515
Vimu5g01939 461 Pfam Kelch motif 288 333 IPR006652 GO:0005515
Vimu5g01939 461 SMART kelc_smart 252 299 IPR006652 GO:0005515
Vimu5g01939 461 SMART kelc_smart 300 352 IPR006652 GO:0005515
Vimu5g01939 461 CDD F-box_AtAFR-like 108 152 - -
Vimu5g01939 461 SUPERFAMILY Kelch motif 172 411 IPR015915 GO:0005515
Vimu5g01939 461 FunFam F-box/kelch-repeat protein SKIP11 154 438 - -
Vimu5g01939 461 Gene3D - 164 438 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01939 Vimu-Chr5 31283289 31285089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01939 112 331 Miscellaneous Gene Families AT4G33900 26.364 4.86e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01939 - - gmx:100792139 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01939 5 31283289 31285089 Vimu5g01939 5 31283289 31285089 ECH