Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01938 ATGGCTCAAGGGAAGATAATTGCACAAGAAATATCAAAGAAAATGGTGACATGGAACAGAATTGAGAAGAGGGACATCATAAGCACCATGCCAAATGAGATCGTTGCAAATGTTCTGTCTCGGTTGACATTGAAAGAAGCTGCTAGAACTAGCGTGTTGTCAACTACATGGAGATATCAATGGACCTATTTCTCTGGGGACTTAGACTTTGATAATTCTCTGAGGACTCTTCTCTTGCGTCATGAGAATGTTGGACTTTTGACCAAGTGCAAAGTTTTTGTTCGTGAGTGGGAGATGTTCATGAGCCTTTTGCAACATGTGATGAAATCGTTGAAATGTCACTCCATGCATGGACTCAGAATCTGCATGGATTTGGGCAACCCTTGGAAGGTGACTGAGTGGGTGAAGTTTGCTGCAGAAAAGAATGTTGAAACTTTGGACCTGGATTTTTCATACAATTTCATGGAACCATTCTTTGAAATAAGTGAGAACATTCGGAATGTGTTGTCGAAGAGTTTTGAAATGAGGGCACTGAGAGTCCTGCGTTTGGCTTCTGTGGACGTGAGTGCTGGGATCATTGAGAGTTTTCTAGCATCTTGTCCAGTGCTTGAAACATTATCTGTCAGAGGATCAAAAAGCGTTGTGAGCTTGAAAGTTCAGGGTCAAGGACTGAGGTTAAAGCATTTGGAGTTGGTTGAATGTCATATTTTGCATCTTCATATCTGTGCTGAAAATCTCATGACATTTACTTACACCGGAGATTATGGAAATTTTAACTTTGAAACTGTTCCAAACCTTGTGGAAGTCTCCTTTGGAGGAAAATGTTGTAATTACCTGCTATCGAACATGCAAGATGCTGAACTTTATGCAGTACTTTCGCAGGTTCATGTTCTGAAATTGGAACTGTTTATACTTTATGGGGGAATTCTTGAAGATCTTCCTGTGTTAAGTAATGTGAAGAACCTGGAACTACGAGTTCGTCACAGGTGTGGAGGGGAACTTGGTCGTACTGTTTCATTACTGAGTGCATTCCCTTCAATAACTGTGCTTAAGATTAAGTTCGTGAGGACCACTATCTGGGAATTGGATGAGGGGTGGAAGGCCAATCTGAAGCATGAGTATCCAAACCTGAGGGAGCTGGAAGTGTCTGGGTACAGAAGAGACACCTGTCAAATTGAGTTGCTGATCAGCATATTTAAAAAGGCACCAAATCTCAACAGGATTGTTGTGGATCCCTTGGCTTCAATGCATGTGCAAAGATCACCTGATGTCAAGGCCAGCATTAGAGAAACGCAACGTGATATGACCATATGGTATGTTGATGCTCTCAAACCTCATGTGTCTCCTTCAACTCAGTTCATCGTTACCAATGGAATGGAGGAGGCTTCTTTGGAGGTTTATGATGCTATGTTAGTTCAAAATTTTCTGCAGACTGTTTTCTTGCTGCTCTTGTCATGCATTTTGCATGAACTAAGAGTGGTACTTTTCGGGCTTTCTAACTCTTGA 1506 0.4157 MAQGKIIAQEISKKMVTWNRIEKRDIISTMPNEIVANVLSRLTLKEAARTSVLSTTWRYQWTYFSGDLDFDNSLRTLLLRHENVGLLTKCKVFVREWEMFMSLLQHVMKSLKCHSMHGLRICMDLGNPWKVTEWVKFAAEKNVETLDLDFSYNFMEPFFEISENIRNVLSKSFEMRALRVLRLASVDVSAGIIESFLASCPVLETLSVRGSKSVVSLKVQGQGLRLKHLELVECHILHLHICAENLMTFTYTGDYGNFNFETVPNLVEVSFGGKCCNYLLSNMQDAELYAVLSQVHVLKLELFILYGGILEDLPVLSNVKNLELRVRHRCGGELGRTVSLLSAFPSITVLKIKFVRTTIWELDEGWKANLKHEYPNLRELEVSGYRRDTCQIELLISIFKKAPNLNRIVVDPLASMHVQRSPDVKASIRETQRDMTIWYVDALKPHVSPSTQFIVTNGMEEASLEVYDAMLVQNFLQTVFLLLLSCILHELRVVLFGLSNS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01938 501 Pfam F-box domain 27 59 IPR001810 GO:0005515
Vimu5g01938 501 SUPERFAMILY F-box domain 23 63 IPR036047 GO:0005515
Vimu5g01938 501 PANTHER F-BOX PROTEIN-LIKE 25 414 - -
Vimu5g01938 501 SUPERFAMILY RNI-like 144 386 - -
Vimu5g01938 501 Gene3D Ribonuclease Inhibitor 97 428 IPR032675 -
Vimu5g01938 501 Gene3D - 7 62 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01938 25 206 EF-hand Containing Proteins AT5G41840 26.842 6.34e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01938 - - gmx:100778140 554.673