Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01907 ATGGCCTTCAAAACACTGTTCCATAGCACTTTGGTTTTGCTTTTTGCTTTTTCATTTTGTGTTTTGAAGGCCAATGCTCGCACTCTCCAAGATGCCTCAATGCGTGAAATGCACGAGCAGTGGATGATTACACATGGAAAACTCTACTTGGACTCTTACGAGAAAGAACAGAAATACCAAGTATTCAAGGAAAACGTGCAACGCATTGAGGCATTTAACAATGCTGGAAACAAGCCTTACAAGCTTGGCATAAACCAGTTTGCTGATCTCACAAATGAGGAATTCAAAGCCAGAAATAGATTCAAGGGTCATATGTGTTCTACCATACCAAGGACACCCTCTTTTAAGTATGAACATGTGACAGCAGTTCCAACTTCATTGGATTGGAGACAGAAAGGAGCTGTTACACCCATTAAGAACCAAGGACAATGTGGATCTTGTTGGGCATTTTCTGCTGTTGCAGCAACAGAAGGAATCACCAAGCTGACCACTGGCAAATTGATCTCTTTATCAGAACAAGAGCTTATTGATTGTGACACAAAGGGTGAGGACGAAGGTTGTGAAGGAGGTTTAATGGACGATGCCTTCAAATTTATCCTGCAAAACAAAGGACTTACCACAGAAGCTGCATACCCATACGAAGGAATTGATGGAATCTGTGATGCAAAAGCAGAAAGCAGCCATGCAGCTACCATAAAGGGGTACGAGGATGTGCCTGCAAATAGTGAGAGTGCGTTGCTGAAAGCTGTTGCTAATCAACCAGTTTCAGTAGCAATTGATGCGAGTGGATATGAGTTTCAGTTTTATTCAAGTGGTGTGTTCAATGGATCATGTGACACTAACTTGGATCATGGTGTGACTGCTGTGGGGTATGGAGTGAGTGATGATGGAACTAAGTATTGGTTGGTGAAGAATTCATGGGGAGTGAAGTGGGGAGAAAAAGGATACATTCGAATGCAAAGAGATGTTGCTTCTAAAGAAGGCTTGTGTGGCATAGCAATGCTGGCTTCCTACCCAACTGCATAA 1026 0.4259 MAFKTLFHSTLVLLFAFSFCVLKANARTLQDASMREMHEQWMITHGKLYLDSYEKEQKYQVFKENVQRIEAFNNAGNKPYKLGINQFADLTNEEFKARNRFKGHMCSTIPRTPSFKYEHVTAVPTSLDWRQKGAVTPIKNQGQCGSCWAFSAVAATEGITKLTTGKLISLSEQELIDCDTKGEDEGCEGGLMDDAFKFILQNKGLTTEAAYPYEGIDGICDAKAESSHAATIKGYEDVPANSESALLKAVANQPVSVAIDASGYEFQFYSSGVFNGSCDTNLDHGVTAVGYGVSDDGTKYWLVKNSWGVKWGEKGYIRMQRDVASKEGLCGIAMLASYPTA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01907 341 PRINTS Papain cysteine protease (C1) family signature 141 156 IPR000668 GO:0006508|GO:0008234
Vimu5g01907 341 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Vimu5g01907 341 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Vimu5g01907 341 SMART Inhibitor_I29_2 38 95 IPR013201 -
Vimu5g01907 341 SUPERFAMILY Cysteine proteinases 30 340 IPR038765 -
Vimu5g01907 341 Gene3D Cysteine proteinases 18 341 - -
Vimu5g01907 341 FunFam Senescence-specific cysteine protease SAG39 19 341 - -
Vimu5g01907 341 CDD Peptidase_C1A 124 339 IPR039417 -
Vimu5g01907 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 334 IPR013128 GO:0008234
Vimu5g01907 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Vimu5g01907 341 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Vimu5g01907 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Vimu5g01907 341 Pfam Papain family cysteine protease 123 339 IPR000668 GO:0006508|GO:0008234
Vimu5g01907 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 141 152 IPR000169 -
Vimu5g01907 341 SMART pept_c1 123 340 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01907 Vimu-Chr5 30953817 30955435 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01907 - - gmx:100778111 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01907 5 30953817 30955435 Vimu5g01907 5 30953817 30955435 ECH