Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01889 ATGCTTCAAAGGTTGTTGGAACAAGAAGAAAAGTTTCATGAAATTGTGGAGATGGTGCATAATAGACCAAATGGATCAGCTATATCAATTCCCAATTTTCTTCCACCCAAGATGAGAGAACTGTTAGGAGAGCTAGTGATGGTTGAGAGTGAAATTGCAAGACTAGAAAGCCAAATAAGCCAACTTCAAGCTGGTTTGAAACATGAACAAGAAGTGACCAAGGAATCAAAGTCTAAAATGTGGAATCAAGGGAATTTGAGTACTTCTAACAATCACTTATCAACTTCTCCGGTTCCAAATCCTAGTCCTATTCGCAGAAATGTTCAAGAAAGGATGGCTTTTGAAACCAAGGCGTTGCATTTCATAAGCAAAGCTATAAAGGGTGATTACAATCTCAGTGATTTCAGTCTAAATGACAAAGCAGCTTTTCTGAAAACTTCTGTTGTAGAACAGAAAGAAAATAAGTTCCAAGAAGATGTGAAATTTCATGAAAGAATTCCAAGAAAAAATGGGACTGTAAAACCTCCCTCACCTATGCGTGACCCACGTCATCCATCACCCAAGCTGCGGGAACGCAATCCAGAGATGTACTTGGATCTTCCAACCAGATCACTGTTGGATCCACTTCTGTCAGAAGAGAATGATCTCAAGTGGCAACCCAACAAGCTATCTGAGAGCATCATGAAGTGTTTGAATTTCATATATGTAAGACTACTCAGAACTTCAAGAGCAATGGAATTGGAGAAATCAGGGCCAATTTCAAGGTCTGTGCACTCTTCTTTAAGTTCAAGAAGCTTCAGGGTGGATACTGGATCAATCCCAAAACCAAGCCTCTTGTTGCAAAAGGAATCTAGGCAGCAAGACCCTTATGGTATCTTTAACACAGAAGAGTCCATTCCAAGGGACATTGGTCCTTACAAGAACCTGGTTATATTCACTTCCAGCTCTATGGATCCCAAGTTTATCTCAAGTCCATCCTCTATACCATTACTTAGGAAGTTAAGGATCTTGATGAGCAATCTTCAAACAGTTGACTTGAAAAGCCTCACAAACCAACAGAAACTAGCATTCTGGATCAACGTGTACAATGCTTGTATCATGCATGGATTTATCCAATATGGAGTGCCATCCACACCAGAAAAACTACTTGCACTGATGAACAAGGCAACCCTCAATGTAGGAGGCAACCTAATAAATGCTCAAGCAATAGAGCATTTCATCTTGAGGAAACGAGATATTTCTAGCATGAAAGAGGTTCAGCATAAGGGTGAGTGGGAAGAGAAAGAATCAGTTGTTCGTGAGCTTTATGGACTTGAGTCTGTAGATCCTAATGTCACATTTGCTCTATGTTGTGGAACTCGTTCTTCTCCTTGTGTGAGGATCTACACAGCAGATGGAATTACAACTGAATTGGAGAAATCAAAACTAGACTATCTTCAAGCTTCAATTCTAGCCACTAGCACCAAAAGAATAGGATTTCCAGAGCTTCTTCTGATGAACATGCTTGATTTTGCTGCAGATATAGAATCATTGGTGGAATGGGTATGTAGCCAGTTACCCACATCAGGCACTCTAAGGAAATCAATGGTGGATTGCTTTAGAGGCCACAATAATACTAATTCTGTGAAGATTTCTACCATTGTTGAAAAGATACCCTATGACTATGAATTCCAGTATTTGTTGACAATATAA 1692 0.3966 MLQRLLEQEEKFHEIVEMVHNRPNGSAISIPNFLPPKMRELLGELVMVESEIARLESQISQLQAGLKHEQEVTKESKSKMWNQGNLSTSNNHLSTSPVPNPSPIRRNVQERMAFETKALHFISKAIKGDYNLSDFSLNDKAAFLKTSVVEQKENKFQEDVKFHERIPRKNGTVKPPSPMRDPRHPSPKLRERNPEMYLDLPTRSLLDPLLSEENDLKWQPNKLSESIMKCLNFIYVRLLRTSRAMELEKSGPISRSVHSSLSSRSFRVDTGSIPKPSLLLQKESRQQDPYGIFNTEESIPRDIGPYKNLVIFTSSSMDPKFISSPSSIPLLRKLRILMSNLQTVDLKSLTNQQKLAFWINVYNACIMHGFIQYGVPSTPEKLLALMNKATLNVGGNLINAQAIEHFILRKRDISSMKEVQHKGEWEEKESVVRELYGLESVDPNVTFALCCGTRSSPCVRIYTADGITTELEKSKLDYLQASILATSTKRIGFPELLLMNMLDFAADIESLVEWVCSQLPTSGTLRKSMVDCFRGHNNTNSVKISTIVEKIPYDYEFQYLLTI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01889 563 MobiDBLite consensus disorder prediction 77 103 - -
Vimu5g01889 563 Pfam Protein of unknown function, DUF547 347 479 IPR006869 -
Vimu5g01889 563 Pfam Leucine-zipper of ternary complex factor MIP1 2 69 IPR025757 -
Vimu5g01889 563 Coils Coil 38 72 - -
Vimu5g01889 563 MobiDBLite consensus disorder prediction 70 103 - -
Vimu5g01889 563 PANTHER EXPRESSED PROTEIN 2 562 - -
Vimu5g01889 563 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01889 Vimu-Chr5 30750314 30754617 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01889 - - gmx:100809848 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01889 5 30750314 30754617 Vimu5g01889 5 30750314 30754617 ECH