Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01886 ATGGCCTCTGCAAACGCTCTCTCTTCAGCTTCTATTCTACGTTCCCCTAACCGCCAGTCTCTCACCCGAAGAGTCAACCAGAACGGAAGAGTGAATTACCGGCAACAGAATAACCGTTTCGCGGTGAAGGCCTCCGCGAAGGAGATTGCGTTTGACCAAAGTTCCCGGGCTGCGCTTCAAGCCGGCATTGACAAGCTAGCCGACGCCGTTGGACTCACTCTTGGCCCGAGAGAACAGAGATTAATGATTATTTCATTGCTTGCAAATTGTTTAGGGAGAAATGTTGTGTTAGATGAGTTTGGAAGTCCAAAAGTGGTTAACGATGGTGTTACCATTGCCCGCGCTATCGAGCTTCCCGATGCCATGGAGAATGCCGGTGCAGCTCTTATTAGAGAGGTTCGTGATATGGTTGTTTTTGTTGTTGTTGCTAGTAAGACCAATGACTCTGCGGGTGATGGGACAACCACGGCTTCGGTTCTTGCTCGCGAAATTATTAAGCTGGGGCTTCTCAGTGTGACTTCTGGGGCAAATCCCGTGTCTCTTAAAAGAGGAATTGACAAAACTGTGCAGGGATTGGTGGAGGAGTTGGAGAAGAAAGCAAGGCCTGTCAAAGGTGGAGATGATATCAAAGCTGTTGCATCTATTTCTGCTGGGAATGATGAGTTGATTGGGCAAATGATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCGTCTTCATTTGAGACGACGGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCACCTCAATTCGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCTAGAGTGTTGGTTACGGATCAGAAGATTTCAGCAATAAAAGATATAATTCCATTGTTGGAGAAAACCACTCAATTGAGAGCTCCTTTACTTATCATTGCTGAGGATGTCACCGGTGAGGCCTTGGCCACACTTGTTGTCAATAAGCTGCGTGGTATCCTTAACGTTGCTGCCATCAAAGCTCCTGGGTTTGGTGAGCGGCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACTGGTGCCGAGTTCCAAGCGAGTGATCTGGGATTGCTTGTTGAAAGCACCTCAGTGGAGCAGCTTGGTTTGGCTCGGAAAGTGACCGTCAGCAAGGATTCTACTACTATCATTGCTGATGCGGCAACAAAGGATGAATTGCAAGCCAGAATTGCTCAGTTAAAGAAGGAGCTGTCAGAGACGGACTCAGTGTATGATACTGAAAAACTGGCTGAGAGGATAGCTAAATTGTCTGGTGGAGTTGCTGTCATCAAGGTTGGTGCTGCTACAGAAACTGAACTTGAGGATCGAAAACTACGAATTGAGGATGCGAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTCCCTGGTGGAGGTACTGCATTGGTTCATCTCTCCACTCTTGTCCCAGCAATCAAGGACAGGCTTGAGGATGCAGACGAAAGGCTAGGAGCTGATATTGTGCAAAAGGCTCTGGTAGCACCTGCTGCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTTGTTGTGGAGAAGATAAAGAATGGTGAATGGGAGGTTGGTTACAATGCTATGGCAGACAGGTATGAGAATTTAGTAGATGCAGGAGTTATCGACCCTGCCAAGGTTACAAGGTGTGGGTTGCAGAATGCTGCTTCAGTTGCAGGAATGGTGTTGACCACGCAGGCCATTGTGGTGGAAAAACCAAAGCCCAAGGCACCTGTAGCTGCTGCCCCACAAGGCCTTACCATTTGA 1824 0.4704 MASANALSSASILRSPNRQSLTRRVNQNGRVNYRQQNNRFAVKASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPREQRLMIISLLANCLGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVRDMVVFVVVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKAVASISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVESTSVEQLGLARKVTVSKDSTTIIADAATKDELQARIAQLKKELSETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDRLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMADRYENLVDAGVIDPAKVTRCGLQNAASVAGMVLTTQAIVVEKPKPKAPVAAAPQGLTI 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01886 607 CDD GroEL 47 590 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 FunFam 60 kDa chaperonin 257 438 - -
Vimu5g01886 607 PRINTS 60kDa chaperonin signature 83 109 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 PRINTS 60kDa chaperonin signature 463 484 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 PRINTS 60kDa chaperonin signature 415 440 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 PRINTS 60kDa chaperonin signature 333 356 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 SUPERFAMILY GroEL-intermediate domain like 202 267 IPR027410 -
Vimu5g01886 607 SUPERFAMILY GroEL equatorial domain-like 55 588 IPR027413 -
Vimu5g01886 607 Gene3D - 202 475 IPR027410 -
Vimu5g01886 607 Hamap Chaperonin GroEL [groEL]. 45 605 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 SUPERFAMILY GroEL-intermediate domain like 427 473 IPR027410 -
Vimu5g01886 607 Coils Coil 397 424 - -
Vimu5g01886 607 SUPERFAMILY GroEL apical domain-like 249 441 IPR027409 -
Vimu5g01886 607 Gene3D GroEL 257 438 IPR027409 -
Vimu5g01886 607 Pfam TCP-1/cpn60 chaperonin family 92 592 IPR002423 GO:0005524
Vimu5g01886 607 ProSitePatterns Chaperonins cpn60 signature. 470 481 IPR018370 GO:0005524|GO:0006457
Vimu5g01886 607 NCBIfam chaperonin GroEL 46 593 IPR001844 GO:0042026|GO:0140662
Vimu5g01886 607 Gene3D - 49 589 IPR027413 -
Vimu5g01886 607 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 36 597 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01886 Vimu-Chr5 30701282 30704353 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01886 - - gmx:100775463 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01886 5 30701282 30704353 Vimu5g01886 5 30701282 30704353 ECH