Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01876 ATGCAGGATGAAGCAACTGTGGTGGGATTTGAAGTTCCGAAATCACCTGAATCCAGTTACAACAACGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCGCCTATGGTGCCTTCACATTTGCAACACACTTTGCTCAATTATCCTGCTACAAGAGACACTGCAGGAACAGTTCCATTGCCTCAGAACGTGATTCTGAATCATCTTTACATTGAGAATAGAGAGTCCCCAAGATCTGTGGTGGCTTTGGGATTCACTCATCGTTTCCGTTCTAAATATGTTACAGTCGTCCTTTACAAACCAGTCCAAAGAAGGGGAAATACAGGCATTTAA 333 0.4384 MQDEATVVGFEVPKSPESSYNNVYPGNEDEARDPPMVPSHLQHTLLNYPATRDTAGTVPLPQNVILNHLYIENRESPRSVVALGFTHRFRSKYVTVVLYKPVQRRGNTGI 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01876 110 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 2 104 IPR043554 -
Vimu5g01876 110 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 31 101 IPR006828 GO:0005515
Vimu5g01876 110 SMART AMPKBI_2 13 102 IPR006828 GO:0005515
Vimu5g01876 110 SUPERFAMILY AMPKBI-like 5 102 IPR037256 -
Vimu5g01876 110 MobiDBLite consensus disorder prediction 1 35 - -
Vimu5g01876 110 Gene3D - 7 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01876 Vimu-Chr5 30561735 30562067 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01876 - - gmx:102661902 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01876 5 30561735 30562067 Vimu5g01876 5 30561735 30562067 ECH