Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01848 ATGGCTCTGCACAAAACACCCCCAAATAGCAGGGGGTACTATGTCAAGATGAAGCTCCTTCACAAACATGGAAGACCTCATCACCAGCAAGAAAAAAACTGCTTTTACAAATACTACAAATGGCTTCTCTGGCTCTCTCTTTCTCTTTATTTCTTCACTTCCTACCTCATCAGCAACAACAACCACGCCAAACAACCCTCTCACCACCAAACAACTCATGCCTCCAGAACTCTCATTGAATCAAACAACACAGCTCCTTCGCAATCTCTGCACTCTCTAGGGTCTTCGTCGCTGAAGAACTTGAAGGTGTTTGTGTACGATCTTCCGCCCAAGTACAACACGGATTGGTTATCGAACGAGAGGTGTAGTAAGCATTTGTTTGCGTCGGAGGTTGCCATTCACAGGGCTCTGTTGACCAGCGAGTTCCGCACTTTTGACCCTTACGAAGCTGACTTTTTCTTCGTACCCGTTTACGTTTCTTGCAACTTCAGCACCGTCAATGGCTTTCCCGCGATTGGTCACGCGCGATCCCTCATCGCGTCCGCTGTCAATCTCCTCTCCTCGGAGTACCCTTTCTGGAACCGGAGCAGGGGCTCCGACCACGTCTTCGTCGCCTCGCATGACTTCGGCTCGTGTTTCCACACGCTGGAGGACGTGGCGGTGGCTGATGGCGTCCCAGAAATCATGAGAAACTCGATCGTGTTGCAGACGTTTGGCGTTGTGTACGACCACCCTTGTCAGAAGGTTGAGCACGTGGTGATTCCGCCGTACGTTTCGCCGGAAAGTGTCCAGGACACGATGGATAACTCTCCGGTGAACGGACGGCGAGATATTTGGGTTTTCTTCCGAGGGAAAATGGAACTTCATCCCAAGAACGTCAGTGGAAGATTTTACAGCAAGAAAGTGAGGACAATGATATGGCGAAAGTTCAACGGTGACCGGAGGTTTTACCTACAGAGACACAGGTTTTCCGGTTACCAGTCAGAGATTGCACGCTCGGTGTTTTGTTTGTGCCCTCTGGGGCTGGTAGAGTCCGTTGCTCTGGGTTGCGTGCCGGTAGTTATAGCAGACGGTATCCGTCTGCCGTTTCTCTCCGCCGTGAAATGGTCGGAGATATCGATCACAGTGGCGGAGAGGGACGTCGGGAGGCTGGCGGAGATACTGGAGCGCGTGGCGGCGACGAACCTGAGCACGATTCAAAGGAAGCTGTGGGACCCGGCGACGAGAAGGGCGCTACTTTTTAACAGCCAGGTGCTACGTGCTTTGAGCGAAAAGCTTGACAGGTCCTACAGGGGTTCGAGGGTTTCACGCCAATTGGATTTTGACACGTTATTAATGGTGACGTGGTTTATGGTGATGACGTGGCAAGAATTGATTGGAGGGATTTGCGGTTTGGAAAAGAAGAACTGA 1410 0.5142 MALHKTPPNSRGYYVKMKLLHKHGRPHHQQEKNCFYKYYKWLLWLSLSLYFFTSYLISNNNHAKQPSHHQTTHASRTLIESNNTAPSQSLHSLGSSSLKNLKVFVYDLPPKYNTDWLSNERCSKHLFASEVAIHRALLTSEFRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARSLIASAVNLLSSEYPFWNRSRGSDHVFVASHDFGSCFHTLEDVAVADGVPEIMRNSIVLQTFGVVYDHPCQKVEHVVIPPYVSPESVQDTMDNSPVNGRRDIWVFFRGKMELHPKNVSGRFYSKKVRTMIWRKFNGDRRFYLQRHRFSGYQSEIARSVFCLCPLGLVESVALGCVPVVIADGIRLPFLSAVKWSEISITVAERDVGRLAEILERVAATNLSTIQRKLWDPATRRALLFNSQVLRALSEKLDRSYRGSRVSRQLDFDTLLMVTWFMVMTWQELIGGICGLEKKN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01848 469 Pfam Exostosin family 99 390 IPR040911 -
Vimu5g01848 469 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 76 410 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01848 Vimu-Chr5 30367565 30369690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01848 K20889 - gmx:100818569 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00686 4 5292480 5293764 Vimu5g01848 5 30367565 30369690 PCT