LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01836	ATGCATCTAGCAATGGCAGCCAACGCTGTCGTCGCTCCGTCGCCGTTCCAACCCAGCTCGCTTCTCCGCTCATCATTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCCTAACCTTTTCGCGCTCGAGGACCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTTGCCGTCCTCAAGGGAACCTCCGCCGTCGAAGGCGTAGCCACCCTAACACAAGAAGACGATGGCCCAACAACGGTTACTGTTCGCATTACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTTCATGAGTATGGTGATACCACAAATGGGTGTATTTCGACAGGAGCACATTTTAATCCTAAAAAATTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGGTTGCAGAGGTTTCAATCGTGGATAATCAGATTCCACTCTCTGGCCCCAATTCAGTAGTTGGAAGAGCCTTGGTGGTTCATGAGCTTGAGGATGATCTTGGAAAGGGGGGTCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTATGAAAAAATTATAA	606	0.5066	MHLAMAANAVVAPSPFQPSSLLRSSFSGVSVKLTPQSLTFSRSRTLTVFAATKKAVAVLKGTSAVEGVATLTQEDDGPTTVTVRITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPKKLTHGAPEDEIRHAGDLGNIVANADGVAEVSIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGMKKL	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01836	201	PRINTS	Cu-Zn-superoxide dismutase family signature	130	139	IPR001424	GO:0006801\|GO:0046872
	Vimu5g01836	201	PRINTS	Cu-Zn-superoxide dismutase family signature	94	116	IPR001424	GO:0006801\|GO:0046872
	Vimu5g01836	201	PRINTS	Cu-Zn-superoxide dismutase family signature	149	171	IPR001424	GO:0006801\|GO:0046872
	Vimu5g01836	201	PRINTS	Cu-Zn-superoxide dismutase family signature	174	200	IPR001424	GO:0006801\|GO:0046872
	Vimu5g01836	201	PANTHER	SUPEROXIDE DISMUTASE CU-ZN -RELATED	41	198	IPR024134	GO:0005507
	Vimu5g01836	201	FunFam	Superoxide dismutase [Cu-Zn], chloroplastic	50	201	-	-
	Vimu5g01836	201	Pfam	Copper/zinc superoxide dismutase (SODC)	65	197	IPR001424	GO:0006801\|GO:0046872
	Vimu5g01836	201	SUPERFAMILY	Cu,Zn superoxide dismutase-like	54	199	IPR036423	GO:0006801\|GO:0046872
	Vimu5g01836	201	CDD	Cu-Zn_Superoxide_Dismutase	53	196	IPR001424	GO:0006801\|GO:0046872
	Vimu5g01836	201	Gene3D	Superoxide dismutase, copper/zinc binding domain	49	200	IPR036423	GO:0006801\|GO:0046872
	Vimu5g01836	201	ProSitePatterns	Copper/Zinc superoxide dismutase signature 1.	94	104	IPR018152	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01836	Vimu-Chr5	30255700	30258549	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01836	K04565		-	gmx:100815376	345.895

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g01836	5	30255700	30258549	Vimu5g01836	5	30255700	30258549	ECH