Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01834 ATGGCGTCACCGTTATCTTCTCTTTCCTCCTCTTCTTCTTCACTCTTTCACCACACCTTCACCAGAAGCTCGAAGGTTCCAGTTCACTTCCCCAACCAAACTGCGCACTTTTTTGTCTTCGCTCAGAAGAAGGCAAAGAAAACTCGAAAGTTGTACGACAAATGGGTATGCTCGTTTTTTTCTACAGTAATGTATTTGTATTTTGCAGCACTATATGTTCACTTGATTATTCTGAAGGAAGATGTGGCTGATGTGGGAAAGCAAGGGCAACTCCTTGATGTGAAGGCTGGTTTTTACAGAAATTACTTGCTTCCTTTGGGAAAGGCACAACTTGTTACACCCCTGCTACTCAAGGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAGACGGGTAAAAGAGGAGGCACAACAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCTCAGCTTCAAAGGGAGTTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAGCTTCACCCAGAAGTTACAGCTAGAGTGAAGTTGAATGTTTCTGCCAACTAA 666 0.4144 MASPLSSLSSSSSSLFHHTFTRSSKVPVHFPNQTAHFFVFAQKKAKKTRKLYDKWVCSFFSTVMYLYFAALYVHLIILKEDVADVGKQGQLLDVKAGFYRNYLLPLGKAQLVTPLLLKEMKIEEERIEAEKRRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRELDKRIVDLPEIRETGEYIAELKLHPEVTARVKLNVSAN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01834 221 NCBIfam 50S ribosomal protein L9 76 220 IPR020594 GO:0003735|GO:0005840|GO:0006412
Vimu5g01834 221 SUPERFAMILY L9 N-domain-like 76 130 IPR009027 -
Vimu5g01834 221 Pfam Ribosomal protein L9, N-terminal domain 76 120 IPR020070 -
Vimu5g01834 221 Hamap 50S ribosomal protein L9 [rplI]. 74 221 IPR020594 GO:0003735|GO:0005840|GO:0006412
Vimu5g01834 221 FunFam 50S ribosomal protein L9, chloroplastic 75 134 - -
Vimu5g01834 221 Pfam Ribosomal protein L9, C-terminal domain 136 219 IPR020069 -
Vimu5g01834 221 ProSitePatterns Ribosomal protein L9 signature. 86 113 IPR020070 -
Vimu5g01834 221 Gene3D - 75 133 IPR036935 -
Vimu5g01834 221 SUPERFAMILY Ribosomal protein L9 C-domain 130 220 IPR036791 -
Vimu5g01834 221 Gene3D - 134 221 IPR036791 -
Vimu5g01834 221 PANTHER 50S RIBOSOMAL PROTEIN L9 76 219 IPR000244 GO:0003735|GO:0005840|GO:0006412
Vimu5g01834 221 FunFam 50S ribosomal protein L9 135 221 - -
Vimu5g01834 221 Coils Coil 117 144 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01834 K02939 - gmx:100500390 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01834 5 30231583 30234317 Vimu5g01834 5 30231583 30234317 ECH