Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01825 GAGAAAGAGAAGAAGGTAGAGAATGAGGGAGTGAAGGCGGAGGAGGAGAAGGAGAAGGAGAAGGAGAAGGCAAAGATACCAAAAGGGTCTAATGGAAAAGAGAGAAAAAAGGGGAAAAAGGGAAGGAAAAATGCAGAAGGGTATCAGAGGTATGTGTATAGGGTGTTGAAGCAGGTGCACCCTGAAATGGGAATCTCTGCCAAATGCATGACTGTTCTGAACAACTTGATGAATGACATGTTTGAGAGATTGGCTGGTGAAGCTGCTAAGCTGAAGGACTACACTGGACACGTGACATTGTCTTCAAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTACCAGGAGAGCTTGGGAAGCATGCCATTGCAGAAGGTGTCAAAGCTGTGAATAAATTCACATCCTATGATACTGATTAA 417 0.446 EKEKKVENEGVKAEEEKEKEKEKAKIPKGSNGKERKKGKKGRKNAEGYQRYVYRVLKQVHPEMGISAKCMTVLNNLMNDMFERLAGEAAKLKDYTGHVTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNKFTSYDTD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01825 138 PRINTS Histone H2B signature 89 106 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 PRINTS Histone H2B signature 48 66 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 PRINTS Histone H2B signature 67 87 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 PRINTS Histone H2B signature 106 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 FunFam Histone H2B 7 135 - -
Vimu5g01825 138 Pfam Core histone H2A/H2B/H3/H4 3 111 IPR007125 GO:0003677
Vimu5g01825 138 SMART h2b3 38 134 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 MobiDBLite consensus disorder prediction 1 31 - -
Vimu5g01825 138 PANTHER HISTONE H2B 19 134 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu5g01825 138 SUPERFAMILY Histone-fold 20 134 IPR009072 GO:0046982
Vimu5g01825 138 Coils Coil 3 23 - -
Vimu5g01825 138 Gene3D Histone, subunit A 5 135 IPR009072 GO:0046982
Vimu5g01825 138 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01825 Vimu-Chr5 30148959 30149613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01825 K11252 - gmx:100786873 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01825 5 30148959 30149613 Vimu5g01825 5 30148959 30149613 ECH