LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01820	ATGCAGCCGAATTTGTTTCCCTTTGGTAGTGTGCTGGGGAATCCGTTTATTTTCAATGGTGATTTGAGCGAGGGAGGGATCGAGAGCTCTAGGGTTTTCTTCTTGCTCCCGTTCTTCTTGCTCTCCCAGGGAGGAGCAATGGATTTGTCCAAGGTCGGGGAAAAATTCTTGAGCTCCGTTAGGTCCGCGAGATCTATCGGATTGCTCCCTCCCGTTCCTGATCGTCCCGAGGTTCCAGCTCGAGCTTCAGCAGCTGCTGCTGTAGCTCGTGCTCTTGCAGGGTTACCTCCTCATCAGAGATATAGTTTTTCTTCAAGTTCAGAAGAATTGAGTTCAATATATGGAAGCAGACCTCAAGGCCAAGTAGTCGAGGAGCTGGAGGATGAATTCTATGAAGAGGAGTTTGATCCAATTAAGCATATTTTAGAGCATGTTCCAGCTGATGAGAATGAGCTAACATATTTTGAAAAACAGGCTGCCCTTAGATTGGTACAACTGGATAAAGTGGCTGAACATTTATCTCGTCATGTTATGGAGCATCATGAAGTAATGGGTAAGTTGAAGAGGCTCGTCTCAGCCATACCTGACTTGGCTCGAATTGGACTTGACTTTAGTTGGGCTCGATCTAATGGGCTTTTTGGCCCTGGTCCATATGAGTTAGTGTCAAGCCCTGTGAGTGGGGCCAAATTGATAGTGAAGGGGATGAATTTGGTCAGAGAATTGGAGAAAGACTTAAGAATTGCAAATGTCATCTGTATGAATGGAAGGAGACATTTGACATCGTCTATGAATGAGGTTTCAAGGGATCTGATTGTGAATTCTTATTCCAAAAAGAAACAAGCTCTTCTGGACATGCTTCCAACCTTGATTGAACTTCAACGGGCTCTGAACATGCAATCAACACTTGAATCCCTTGTAGAGGAAGGGAATTACTGGAAGGCCTTTCAAGTTCTATCTGAGTATTTGCAACTCTTAGATAGTTTGTCAGAGCTTTCAGCAATACAAGAAATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACGTTGCAGAAGCTGGATGCTCTTTTATTGGGAGTATGTCAAGAATTCAAGGAAGATGGCTATATAACAGTAATTGATGCATATGCATTAATAGGGGATACTGCTGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAGAAACGCACTCTGTATTAAAGGGTGTCATGCATGAGGACGAGGACGAAATTTTGCAAAATAGTAGGCTCACTTACAGCGATCTATGCCTCAGAATACCTGATTCAAAGTTCAGGCAATGCTTATTAAGAACGCTGGCTGTTCTATTTGACCTTATGGGTTCATACCATGAAATTATGGATTTCGAGCTGGAAAGAAAGGACATAGTACAAAATTCAAATAAGAGCAATGAAGAGATTTCCTGTAGTCCAGGCGCTCAGGAAGTTGATTCAGATGTAAGAGCCTCCAACAATTCTTTGTCCAGTTCAGGAGATATATTACATGGTTCATCTTCTAGGGAGGAATCTGCAAGAATGAGCTGTCTGACTGAAACTAGTGGTTCACCATACAGTGATTATCATGATCCAATTAAGGAGACTGGGAAGGAGGACAGTGCAACGTTAAACATTGAATCCCCTTGGTACCATCTTCGTAAAGAAGCTATAACCTTTGTGTCACAGACCCTTCAAAGAGGGCGAAGGAATTTGTGGCATCTCACTGCAAGTCGAGTGTCTGTTTTGCTTTCTTCTGCTGCAGTTTGTACCGCTAGTATTCATCAATTCTTGAAAAATTATGAAGAACTCAGTGTGTTTATTTTGACTGGGGAAGCCTTTTGTGGAATCGAAGCAGTTGAATTTAGGCAGAAGCTAAAGGCTGCACTAAAAATGGTTATGGAGAAAGAGACTTGGCTAAAATTACCTCTAGAAACAGTACAAATGATCAGTTTTGCAGGACTTATTGGTGATGGTGCACCCTTGATTTCTTTATCCAGCGGCAAATCAATTAATGCCGGTGCATTCCATTCCCATAAATCAGTGAATATGGTTCATACTGGTGCAAGGAAAAATGGGTTTTCCCACTGGATCAAAAGTGGAAACCCTTTCTTGCAAAAATTACCTAACTCCAATGAAGGTCATGGTTACTCCCAACCTAATGGATTAGTTCATGGTGAATCTGATGGAAGTTCAACCAAATACTTTTATGATGATAGAACACCCAGAAACAACGATTCCAATCACATAAATGGTGCCAATTCTGTTTCAGAAGATGAAGATGAGGATCTTCTTGCTGACTTTATTGATGAAGACAGCCAACTACCAAGTCGAAGTTCTAAACCCTTTCATTCAAGAACTCTTTCTTCACATGGTAATGATGACGAGAATACAACACAAACTGGATCTTCTCTCTGTCTTTTAAAGTCTATGGATAAATATGCAAGGCTTATGCAGAAATTGGAAGTGGTAAATGTTGAGTTCTTTAAGGGAATATGCCAATTGTTTGAAATATTTTTCTATAATATATATGAAACATTTGGTCAGCAAAACACTAGCTCAAGTGGAAAAAGCTCAACTAACTCTCTTAATTATCGCTTGAGAACAGCTTTGTCTAGAATAAACCAAGATTGTGAAGAGTGGATTAAGCCTCAATCGTCTTCACCAACATCTTTGACGTCTTCATTTGCACATGCAGAATTGACACCTACAAACCCGCCCAATGCAAATCTTGGTCATTCCTCAGGCACCTCTTTTGGTCTCACGGAAAGATGTGTGGCTGTTGACACTATATCACTTGTTGCTCGAATACTGAATAGATCTAAAGCTCATCTTCAATCAATGCTCTTGCAAAGTAATTCAACTATACTTGAGGATTTCTACGTTCATCTGGTGGATGCTGTACCAGATCTTACAGAACATATTCATCGAACTACAGTGAGACTATTGTTGCACATTAATGGATATGTTGATCGTGTTGCCAATTGTAAATGGGAATTAAAAGAGCTTGGCATGGAGCATAATGGATATGTTGATTTGTTGCTGGGGGAGTTTAAGCACTATAAAACAAGACTTGCTCATGGAGGAATTCGTATAGAGATTCAAGGCCTATTATTGGATTATGGGCTTGAAATTGTGGCAGAAACTCTTGTTGAAGGACTTTCAAGGGTGAAGAGATGCAGTGATGAAGGACGAGCTCTTATGTCATTAGATCTTCAGGTTTTGATTAATGGATTACAGCATTTTGTGTCAGTGAATGTGAAGCCCAAGCTTCAAATGGTTGAAACTTTCATCAAGGCTTACTACCTTCCCGAGACAGAATATGTGCATTGGGCTCGAGCACACCCAGAATACACTAAAAGCCAGATTATTGGACTGATCAACCTTGTTGCCACTATGAAAGGTTGGAAGAGGAAAACCAGAGCTCCGTATAAAGGTATTGCATATTACTTGGCATTTGATCCCTTGTTAATTATGGAGTATTTTCCAAATCTGTACTTTGGCATCTTGTAG	3516	0.4076	MQPNLFPFGSVLGNPFIFNGDLSEGGIESSRVFFLLPFFLLSQGGAMDLSKVGEKFLSSVRSARSIGLLPPVPDRPEVPARASAAAAVARALAGLPPHQRYSFSSSSEELSSIYGSRPQGQVVEELEDEFYEEEFDPIKHILEHVPADENELTYFEKQAALRLVQLDKVAEHLSRHVMEHHEVMGKLKRLVSAIPDLARIGLDFSWARSNGLFGPGPYELVSSPVSGAKLIVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALLDMLPTLIELQRALNMQSTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTAGLAEKIQSFFMQEVISETHSVLKGVMHEDEDEILQNSRLTYSDLCLRIPDSKFRQCLLRTLAVLFDLMGSYHEIMDFELERKDIVQNSNKSNEEISCSPGAQEVDSDVRASNNSLSSSGDILHGSSSREESARMSCLTETSGSPYSDYHDPIKETGKEDSATLNIESPWYHLRKEAITFVSQTLQRGRRNLWHLTASRVSVLLSSAAVCTASIHQFLKNYEELSVFILTGEAFCGIEAVEFRQKLKAALKMVMEKETWLKLPLETVQMISFAGLIGDGAPLISLSSGKSINAGAFHSHKSVNMVHTGARKNGFSHWIKSGNPFLQKLPNSNEGHGYSQPNGLVHGESDGSSTKYFYDDRTPRNNDSNHINGANSVSEDEDEDLLADFIDEDSQLPSRSSKPFHSRTLSSHGNDDENTTQTGSSLCLLKSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYNIYETFGQQNTSSSGKSSTNSLNYRLRTALSRINQDCEEWIKPQSSSPTSLTSSFAHAELTPTNPPNANLGHSSGTSFGLTERCVAVDTISLVARILNRSKAHLQSMLLQSNSTILEDFYVHLVDAVPDLTEHIHRTTVRLLLHINGYVDRVANCKWELKELGMEHNGYVDLLLGEFKHYKTRLAHGGIRIEIQGLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVSVNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYTKSQIIGLINLVATMKGWKRKTRAPYKGIAYYLAFDPLLIMEYFPNLYFGIL	1171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01820	1171	MobiDBLite	consensus disorder prediction	884	914	-	-
	Vimu5g01820	1171	Pfam	Vacuolar-sorting protein 54, of GARP complex	231	459	IPR019515	-
	Vimu5g01820	1171	Pfam	Vacuolar-sorting protein 54, of GARP complex	123	186	IPR019515	-
	Vimu5g01820	1171	MobiDBLite	consensus disorder prediction	709	729	-	-
	Vimu5g01820	1171	MobiDBLite	consensus disorder prediction	709	760	-	-
	Vimu5g01820	1171	MobiDBLite	consensus disorder prediction	472	527	-	-
	Vimu5g01820	1171	Pfam	Protein of unknown function C-terminus (DUF2451)	920	1141	IPR019514	-
	Vimu5g01820	1171	PANTHER	UNCHARACTERIZED	47	186	IPR040047	GO:0032456\|GO:0042147\|GO:1990745
	Vimu5g01820	1171	MobiDBLite	consensus disorder prediction	472	535	-	-
	Vimu5g01820	1171	MobiDBLite	consensus disorder prediction	775	802	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01820	K23288		-	gmx:100803274	1857.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g01820	5	30078493	30106739	Vimu5g01820	5	30078493	30106739	ECH