Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01808 ATGGGGGTGCTAGGTTATTGTCACGAGGGTTGTTCCACAAGTCAAATAGTCTCTGCAAACGAAGTTGAGTACTTGACCACGTGCAACCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAAAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGAACAGTTTTGAAGAGATCACGGCCTAGAACTCTTGATCAAGCACCGAAATCTTCCAAGACAAAGGCTAATAATCCCATGAAACAAGTTACTTCTGTGACGAGTTTGAAAAGAACAAAGGCTAAACGTTCTGAACAAGAACCAACTACTGGGATAAATGATAATCATCTTGACATGCAACAAGTTGCTTCTGTGGAAACTTCAGCTGCAAAACGCCATCGCAAAAATTGTTCTTGGGGCATTATATGGAAAAAGAAACATAATGAAGATTCAGACGATTTCATGCTCAGGAACATACTTTTAAAAGGGAGCTCGAACATACCAGGACTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATACGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTGAGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCTAAGAAACAAGAGGGCAAAAGGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAAGTTGCTACTCCCGTCTTTCCTGTATATGATGATACTTCTACCTTTTCTGCGGAGGATCCTAGTCATGTCTTTCCTGATGAGGATCCTACTCCCGTCTTTCCTGTTGAGGATGATCGTCTTCTTTTCTCTCTCACAAATGTTGAACTGGTAACAGAACCCAAGATAGAAGGAGATATGGAGTGGAATGGTGTCTCTGCGCCAGGGCTTCAGAAACTGCCAGTGAGAAGGAATGTTAAGAACGAGGGTGATGATGTTTCTTTTGAAGGTGGTCTACCTTTGGATGCTGAATTCTCTACATACGATGGTGAGACGGGTAATCTGTCCAATCCTGCGGAGGAATCTATACCTTTAGAATACACCTCTGGTGTTGACTTAGACAACAAGCTGCCGAATGACTCTGAAAATGAAAATTACGATGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTAACTGAATTGTTGCAGTCAGATGATGGTGGTCAGTTCGAGGGTGTTGACATGTCTGAGGACTTGTCAGGATATATGGAAAATTCTAGCACCACCACCCTTATTCCTGAATCGTCTGATGCTAGTTTGGCAGATAAATCAGCACCTACGACTTACACCGGCCATAGTTGTATGCAATGTTCACAAATGGAACCAGCCCCTGATCTCCGTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCACCTTGGGTTGAATTACCATCGCTTGGAAGTTGGAGGTGTGGCCATTGCCGAGAATATGGTAATAACTGA 1575 0.4216 MGVLGYCHEGCSTSQIVSANEVEYLTTCNQCYHARLLAQKENSNESPTSPLLLRGRENNSGTVLKRSRPRTLDQAPKSSKTKANNPMKQVTSVTSLKRTKAKRSEQEPTTGINDNHLDMQQVASVETSAAKRHRKNCSWGIIWKKKHNEDSDDFMLRNILLKGSSNIPGLKPVCHLCRKPYTSDLMYICCETCQNWYHAEAVELEESKLSSVLSFKCCKCRRIKSPVCPYSDLKPKKQEGKRSRTKAKKEHSGADTDSGAISDMRECEVATPVFPVYDDTSTFSAEDPSHVFPDEDPTPVFPVEDDRLLFSLTNVELVTEPKIEGDMEWNGVSAPGLQKLPVRRNVKNEGDDVSFEGGLPLDAEFSTYDGETGNLSNPAEESIPLEYTSGVDLDNKLPNDSENENYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSEDLSGYMENSSTTTLIPESSDASLADKSAPTTYTGHSCMQCSQMEPAPDLRCEICGILIHSQCSPWVELPSLGSWRCGHCREYGNN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01808 524 PANTHER PHD FINGER FAMILY PROTEIN 6 487 - -
Vimu5g01808 524 MobiDBLite consensus disorder prediction 41 115 - -
Vimu5g01808 524 MobiDBLite consensus disorder prediction 41 67 - -
Vimu5g01808 524 MobiDBLite consensus disorder prediction 76 97 - -
Vimu5g01808 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 227 IPR013083 -
Vimu5g01808 524 MobiDBLite consensus disorder prediction 234 256 - -
Vimu5g01808 524 MobiDBLite consensus disorder prediction 234 261 - -
Vimu5g01808 524 SUPERFAMILY FYVE/PHD zinc finger 172 227 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01808 Vimu-Chr5 29932752 29945621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01808 5 521 EF-hand Containing Proteins AT5G22760 35.660 1.32e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01808 - - pvu:PHAVU_011G089200g 840.106