Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01801 ATGGGAACTCTGTTTCCTGATGAAGAATCTGAGAACCCAAATGGTGATCATCAACTTCATCACCAACATGAAGATGTTGATGCAGGAGCTCTTTTTGTCCTCAAATCCAAAGGTTCTTGGTTGCATTGTGGATACCATTTGAGCACATCGATTGTGGCACCACCTCTTCTAAGTCTTCCGTATGCATTCACATTCTTGGGATGGACGGCTGGGATCTCATGCTTGGTGATCGGAGCATTGGCAATATACTTGCTGTCAAATCCAAACGGGAGCATGAAACTTTACGAATTTGTAATCATATTTGGATGCTTTATGCTAATTTTGGCTCAAATCCCATCTTTCCACTCACTCAGACACATTAATCTCGTGTCACTCATTCTCTGCTTGGCCTATAGTGCTGCTGCTACGGCTGCTTCCATTTACATTGGAGAGTCATCCAAAGGACCAGAAAAGGACTACTCTATAAAAGGTGACACTGAAAATCGCTTATTTGGAGTCTTCAATGCAATCGCCATCATTGCCACAACCTATGGAAATGGAATCATTCCAGAAATTCAGGCAACACTAGCACCACCAGTGAAAGGGAAAATGTTCAAGGGACTATGTGTATGCTATTTCGTACTCATAGTCACTTTCTTTAGTGTATCTGTTTCTGGATACTGGGCATTTGGCAACGAATCCGAAGGCCTCGTATTAAGCAATTTTGTGGACAATGGGAAGCCTTTGGTGCCCACATGGTTCATTTACATGACCAACATTTTCACTGTAACACAACTATCAGCAGTTGGTGTGGTTTATTTGCAACCAACAAATGAAGTGCTGGAGCAAGCATTTGGAGATCCAAAAAGCCCCGAGTTCTCGAAACGCAATGTAATACCGAGAGTGATTTCTCGATCACTGGCTATTACTATTTCAACCATTATAGCAGCCATGCTTCCATTTTTTGGGGATATAAACTCTCTTATTGGAGCTTTTGGTTTTATCCCTCTCGATTTCATCTTGCCAGTTGTTTTCTACAACTTCACATTTAGGCCATCTAAGCGAACCTTTATTTTCTGGTTGAATCTAACTATTGCCGTTACTTTCTCTGCTTTGGGAGCTATAGCAGCAATTGCAGCAGTTAGACAGATTGTTCTTGATGCAAAAAATTACCGATTATTTGCTAATGTATGA 1173 0.4126 MGTLFPDEESENPNGDHQLHHQHEDVDAGALFVLKSKGSWLHCGYHLSTSIVAPPLLSLPYAFTFLGWTAGISCLVIGALAIYLLSNPNGSMKLYEFVIIFGCFMLILAQIPSFHSLRHINLVSLILCLAYSAAATAASIYIGESSKGPEKDYSIKGDTENRLFGVFNAIAIIATTYGNGIIPEIQATLAPPVKGKMFKGLCVCYFVLIVTFFSVSVSGYWAFGNESEGLVLSNFVDNGKPLVPTWFIYMTNIFTVTQLSAVGVVYLQPTNEVLEQAFGDPKSPEFSKRNVIPRVISRSLAITISTIIAAMLPFFGDINSLIGAFGFIPLDFILPVVFYNFTFRPSKRTFIFWLNLTIAVTFSALGAIAAIAAVRQIVLDAKNYRLFANV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01801 390 Pfam Transmembrane amino acid transporter protein 90 374 IPR013057 -
Vimu5g01801 390 PANTHER OS05G0424000 PROTEIN-RELATED 35 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01801 Vimu-Chr5 29879091 29885707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01801 81 390 Organic Solute Cotransporters AT1G08230 66.667 1.55e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01801 - - pvu:PHAVU_011G089500g 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01801 5 29879091 29885707 Vimu5g01801 5 29879091 29885707 ECH