Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01795 ATGTTCAAGAAGCGTTTTCGTCTCCACCTCCTCCCTCTGTCGAAGAAGCACGGTCAGTTTCCACTTCGACGTAACGCGGTTACCTTATGTGACAGAGTTCAACAACCCTCAGACGCCACCATAGCCAATCTTGTCCTCGAATCAGACCCACTCACTCTCTCTGAGGCCCTATTCAAGCCCACAATCCAATGGGCGCCTGAGCTCGTGAACAAGGTCATGAAGCGCCTCTGGAACCATGGGCCCAAGGCCCTTGAATTCTTCAAACACCTGGACCGCCACCCTGCCTACATCCACTGTGCCTCGTCGTTCGACCATGCCATCGACATCGCGGCCCGCATGCATGACTACAACGCCGCATGGGCCTTAGTGGGCCGCATGCGATCTCTCCGCCGCGGCCCAACTCCGCGAACCTTCGCCATCCTCGCCGAGCGCTACGCCGCGAACGGAAAACCCCACCGCACCGTCAGAACCTTCCTCTCCATGCACGAGCACGGTTGCCGCCAGGACCTGAACTCATTCAATACCGTCCTCGACATCCTCTGCAAATCGAAGCGCGTGGAAATGGCGCACTCCTTACTCAAAACGTTCCGATCCAGATTCAAACTCGATTGCGTGAGCTACAACACAATCGCAAACGGTTATTGCTTAATCAAACGCACGCCGATGGCGTTGCAGGTTCTGAAGGAAATGGTGCAGCGAGGGATAAGCCCTACGATGGTCACGTACAACACATTGCTGAAAGGGTATTTTCGGAGTAATCAAATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAGTGCGAGATTGATGTTGTGACTTACACGACTGTGATTCACGGGTTTGGGGTGGCGGGTGAGGTTAAGAAATCTCGTAGGGTTTTTGATGAGATGATGAAGGAGGGTGTGGCTCCTAGTGTCGCCACGTGTAATGCATTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAATGCGGTGGTGGTTTTTGAGGAGATGATGAGGAAGGGGTTGTGTGTGCCGAATGTGGTTACTTACAACGTTGTTATCAGAGGTTTTTGTCATGTTGGGGACATGGAGAGGGCATTAGGGTTTATGAGAAGAATGGGGGAACATGGTTTGAGGTGTTCTGTTCAGACTTATAATGTTGTGATTAGGTACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGATGTTTGAGAAGATGAGGGATGAGCCTTGCTTGCCCAATTTGGATACTTACAATGTTCTGATCAGTGCCATGTTTTTGAGGAAGAAATCGGAGGATTTGGTGGTGGCTGGGAAATTGTTGATGGAGATGGTTGATAGAGGGTTCTTGCCACGGAAGTTTACTTTCAATAGGGTGTTGAATGGACTTGTTATTACTGGGAATCAGGATTTTGCCAAGGAGATTCTGAGAATGCAGAGCAGGTGTGGCCGTATTGTTCGGCGTTTGAAATTGTGA 1476 0.5014 MFKKRFRLHLLPLSKKHGQFPLRRNAVTLCDRVQQPSDATIANLVLESDPLTLSEALFKPTIQWAPELVNKVMKRLWNHGPKALEFFKHLDRHPAYIHCASSFDHAIDIAARMHDYNAAWALVGRMRSLRRGPTPRTFAILAERYAANGKPHRTVRTFLSMHEHGCRQDLNSFNTVLDILCKSKRVEMAHSLLKTFRSRFKLDCVSYNTIANGYCLIKRTPMALQVLKEMVQRGISPTMVTYNTLLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGEVKKSRRVFDEMMKEGVAPSVATCNALIQVLCKKDSVENAVVVFEEMMRKGLCVPNVVTYNVVIRGFCHVGDMERALGFMRRMGEHGLRCSVQTYNVVIRYFCDAGEIEKGLEMFEKMRDEPCLPNLDTYNVLISAMFLRKKSEDLVVAGKLLMEMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCGRIVRRLKL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01795 491 Gene3D Tetratricopeptide repeat domain 199 300 IPR011990 GO:0005515
Vimu5g01795 491 Gene3D Tetratricopeptide repeat domain 375 489 IPR011990 GO:0005515
Vimu5g01795 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Vimu5g01795 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Vimu5g01795 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Vimu5g01795 491 Gene3D Tetratricopeptide repeat domain 61 198 IPR011990 GO:0005515
Vimu5g01795 491 Pfam PPR repeat family 237 284 IPR002885 -
Vimu5g01795 491 Pfam PPR repeat family 307 340 IPR002885 -
Vimu5g01795 491 Pfam PPR repeat family 343 391 IPR002885 -
Vimu5g01795 491 Gene3D Tetratricopeptide repeat domain 301 374 IPR011990 GO:0005515
Vimu5g01795 491 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 133 356 - -
Vimu5g01795 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vimu5g01795 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 275 308 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 172 198 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 382 414 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 346 379 IPR002885 -
Vimu5g01795 491 NCBIfam pentatricopeptide repeat 240 274 IPR002885 -
Vimu5g01795 491 Pfam PPR repeat 205 235 IPR002885 -
Vimu5g01795 491 Pfam PPR repeat 172 195 IPR002885 -
Vimu5g01795 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01795 131 486 Glycosyltransferase AT1G05670 28.412 5.37e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01795 - - gmx:100808784 830.861