Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01788 ATGTTTTTGGTGGTAAGACCATGTGGTTCTTCTTCTGCGGGTATTCATCGTCTTCAACCCACTCCCACATCGCACCGTAGTAGAAACGTCGTCATTAGATGCTCGCTCACCAGCGTGCAGGAGAAGAAGGAGAAAGCTCAGTTGGATTCGGAGCTGCAGCCTTCGCTGGCATTTCCGCCGATCAGGGCGGCGAAGAGGGTGGTTCTGGTGAGGCACGGGCAAAGCACGTGGAACGCGGAGGGGAGAATCCAAGGAAGCTCTAATTTCTCTGTTCTGACGAAGAAGGGGGAGTCTCAGGCTGAGACCTCACGCCAAATGCTCATCGACGACCACTTCGATGCCTGCTTTGCCAGTCCTTTGGCTCGATCCAAGAAAACCGCTGAAATCATTTGGGGATCTCGCCAGGACCCCATCATTACCGACTTTGATTTGAGGGAAATCGATTTGTACTCCTTTCAAGGTCTGCTGAAGCATGAGGGAAAAGCAAAATTTGGTTCTGCTTATCGTCAATGGCAGGTGGATGCTGAGAATTTCATCATTGATGGTCATTATCCAGTTAGAGAATTGTGGGAACGTGCTAGAAGCTGCTGGACTAAAATCTTAACTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTACCGGTCTGGGGTCCGAGTATTTCAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGACTTCATCCCAAGATCTGAGGATGGATCTCCGCATATTTGCCTTAACCGCTTAAATCAGACCCCTGGTTCACCTATTGCTGGTGGGAAATCTGGAGGTCGAGAGACAAGTAAGAGGATCGTACTTGTTTGTAATGGATCAACACAAGGAAATACAGAGGATGGTTTTCCTTTGGGTGGTGATCAACCATTGAACATGCTTGGTGTCATACAGTCCCAGAAATCTGCAGAGCTACTACTTGATTTGAGAGTGAGTTCCATAATTAGTAGTCCTAATAAAGCCTGTGTTGGGACAGCCTCGGTAATCTCCCAGGTACAAGAAGCTGCAGACTGCTTGGGAGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGGACCTTGATTTTGAAACTATCCTCAAACAATCTGAAACGGCAAGTAATGATATGTCCAATTTTCCGCCATTTCAACCTGGTTGGTTAAATAGAGTTGATGATGGACTGAGAACAACATTATGGAATCAATCTGGAAAAGCCTGGCTATCTTTGTTGGATGAAATATCTGATGAATCTAAGCAAGGAGAAGTTATAGTGGCAGTTGGTCATCCTGCAATCAACATAGCACTAATGGGGCACTGCCTTAGTTTGAGCAAAGAATGGTTGGGATCATTTCATCTTGATGCAGGAAGCGTTAGTGTTCTTGACTTCCCTGATGGAGCTAAGGGAAAAGGTGTCATCAGATGCATAAATTATACTGCACATTTGGGGAGGTGGTCCATACCTATCACAAGATCAACAGAAGATGGTGAAGAGTTTTAA 1545 0.4608 MFLVVRPCGSSSAGIHRLQPTPTSHRSRNVVIRCSLTSVQEKKEKAQLDSELQPSLAFPPIRAAKRVVLVRHGQSTWNAEGRIQGSSNFSVLTKKGESQAETSRQMLIDDHFDACFASPLARSKKTAEIIWGSRQDPIITDFDLREIDLYSFQGLLKHEGKAKFGSAYRQWQVDAENFIIDGHYPVRELWERARSCWTKILTHDSRSVLVVAHNAVNQALVATAIGTGLGSEYFRTLLQSNCGVSVLDFIPRSEDGSPHICLNRLNQTPGSPIAGGKSGGRETSKRIVLVCNGSTQGNTEDGFPLGGDQPLNMLGVIQSQKSAELLLDLRVSSIISSPNKACVGTASVISQVQEAADCLGADCVPRYVEMKQMGDLDFETILKQSETASNDMSNFPPFQPGWLNRVDDGLRTTLWNQSGKAWLSLLDEISDESKQGEVIVAVGHPAINIALMGHCLSLSKEWLGSFHLDAGSVSVLDFPDGAKGKGVIRCINYTAHLGRWSIPITRSTEDGEEF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01788 514 CDD HP_PGM_like 66 249 IPR013078 -
Vimu5g01788 514 SUPERFAMILY Phosphoglycerate mutase-like 284 502 IPR029033 -
Vimu5g01788 514 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 69 78 IPR001345 GO:0003824
Vimu5g01788 514 FunFam Phosphoglycerate mutase 65 271 - -
Vimu5g01788 514 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 282 481 - -
Vimu5g01788 514 Pfam Histidine phosphatase superfamily (branch 1) 287 482 IPR013078 -
Vimu5g01788 514 Pfam Histidine phosphatase superfamily (branch 1) 67 251 IPR013078 -
Vimu5g01788 514 FunFam Putative 2-carboxy-D-arabinitol-1-phosphatase 278 501 - -
Vimu5g01788 514 Gene3D - 65 255 IPR029033 -
Vimu5g01788 514 SMART PGAM_5 286 451 IPR013078 -
Vimu5g01788 514 SMART PGAM_5 66 220 IPR013078 -
Vimu5g01788 514 Gene3D - 279 501 IPR029033 -
Vimu5g01788 514 SUPERFAMILY Phosphoglycerate mutase-like 65 262 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01788 Vimu-Chr5 29650678 29654482 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01788 K22200 - gmx:100798495 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01788 5 29650678 29654482 Vimu5g01788 5 29650678 29654482 ECH