Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01785 ATGGAGCTCTCAGAAGAATGGAAATCATTCTTCCCAGTGGGATCCTCTACAGTAGCTCCTCTTCTTCTCTCCAGTTCCCCTTCTCTCCCTTTGGGTCCTCTTCTCTTCAACCCTAATCCTAATTCGCTCTCCCTTATCTTCTCTTCCACCACTCTGCAACCCTCTCTTCACTACACTCCATGCCTCTTACCTTCACGATTCCTTCTTTCTTCCCACCCTTCTTCCATTCTCCCATCCACCGCTTCCTCCATCACCTCCCTCTTCTCCTCCACCCAACAAAACGACGCCGCTTCCCCCTTCCTCCGCAACCGCCTCCACCTCCTCACCTACCCACATCGCCCTTATGCCCTCATTTTATTTCCCGCCGGCGACAATGACCACAAGCTCTCATTTTTCACACTCCGCTTCGAGGACTCTCGCTTCCATACTCAGCTCGACACTAACGGCGACGTTTTTTATGCGTCTACAGGCTCCTTGCATCGTATCTTGAACATTTCTGTTAACCCTGTTACTGATTATGACGAGGTTGATGGAGTTATTGGGTATTTTCTTGCTACTACTCTGTATTCCGTTCATTGGTTCGCTGCGAGGCACAATCAAATTTTGGATAGACCTAGTGTGGTCTGTTTGGGTTATAAGATGTTTAAGACTTGCCCTGTGGCGCATGCTTGTTGGAGTCCTCATATATTGGAGGAGAGCTTGGTTTTGTTGGAGAGTGGCCATTTGTTTTTGTTTGATTTGGAGTGTTTTGGCTCCGGTGCTGGTTTCAAGGGGACTAGGTTGAAGGTGCCCTGGAATGATTCTTCAGAGAGTAAGGCGTGGCTGAGTTGTGAGTTTAGTTGGCACCCCAGGATTTTGGTTGTTGCGCGTTCGGATGCTGTTTTCTTGGTTGATTTGAGGCTGAAAGAGTGTAGTGTGAATTGTTTGATGAAGATCGAGATGCTGCGAATGTATGCTCCGGATGAGAATGAGCAGTTTCTTGCGTTGTCGAGGGCTGCTCCGGACAATTTTTACTTTGCTGTGGCTTCAACTAGTGTTTTGCTTCTATGTGATGTTAGGAAGCCTTTGGTGCCGGTTTTGCAATGGGTGCATGGGATTGAAGGGCCTAGCTTCATGTCTGTATTAAGGTTGTCTGATTTGAGGTCCCACTCGAAGGAGGATAATTTTAAGGTGGCTTCTGAATCTGGGTTTTGTATTATGTTGGGATCCATTTGGAATTGTGAGTTCAATATCTTCTGCTATGGGTCTATATTACCATTTCGCAAAGGATCTGTTACTTCAAAGATTAATCCAGCCATTTGTGCTTGGGAGGTTCCACTTGAGATTAATTTGTCTGGTCACGAGTGTCACTGTGGAAGTTGTCTCTTAAGGAAAGAGTTCACGAAGGATGCACTTCCTGAGTGGACTGATTGGCAGCAAAAGAAAGAGATAGTTTTGGGATTTGGCATTTTAAGCAATAAACTTGCTGCATTACTCACCGAACCTGATGAAAATGGGGGTTTTACACTGATAAGGCTTACTTCATCGGGAAAGTTTGAATTGCAGAGATATCATGCCTCTTGGGCTCCGGCCAGAAACTTAGAAGATTGCCCAGATCAAGTATTGTGTTTGAATAGACACTTACTGTATCCCATGAGTGATGAGGATTACAAATTTCCAAAAAATTATAACTACTTAAAATTGGATTACCTTTACTCATATGCATATGGTGGACTCACTCGATTCCTGGTTAGAAAACTAAAAAGAAACTTTCAGGATGCTCATGACAAAGAACCTTTTAGTGCAGAAGTGCATGAGTTATTGTGTGAGAAATTAAATGCTTGTGGATTTGGTCAACTAAGATCCTGTCCTGAAGTTACTTCTGTTTTTAATGATGTCAAGCTACCAACAAGCTTACATGAGGTTGCTTGGAGAAGAATGTGGACTGACTTACCTATGGAACTGTTGCAGTTGGCGTTTTTGAGTCGTGCTGAATGCCATAAAGTTATTGGAAACCTGGATCACAATAGGGTGGCATTGGAATCTTTAGCTGTTCCCGAACTTCCTCAATTGCCTCCATTCTTTTTAAGGAAATCATCACCGCACGGCAATAATGACATTGTGGGTCCAGTTATTCCTTTTCCTGTTCTTCTTGTGCTTAATAAATATCGCAATGGGTGCTCAAACTTGGAAGGTGAATTTTCAATAGAAACAGAGCTTAGCCTCAAATACAAAGAAGTTATGCAGGTGGCTGGCGAGATTGCTGTCTCAGCTTATGGGCCTACACACCTTGATGATCATGCAGTCTCCCTTGCTGAGGATAGAGACGAAACCTGGGCTGGATATTCGAAACCAAAGTCTTTTTTGTTATACCGTCCAGTTTCATTCAACTCGTCTGCAGCTGCAGCTGACCATGTACGTGAAAAGTCTGTTTATAGTGACGCAAATTATGATACATTCATCTCTCATATCCCAGAGAAGAAGTCCACTGAGCAGACTGAATCTGTTGGCCAAGAGATATTTGATGATCTTTCCCCTGTTGAATTGAGATTTGATGCTCCTGCGAAGAAGCTCGAACCTCTAGGTTTAAAGGCATATGATCTATTGAAGAGACAGATGTCTAAATGGCAACAAAGTTTTGATTCGTATAAGGAATTTTGTATTCAATCTAGATTTGAAAAAAAATAG 2667 0.4334 MELSEEWKSFFPVGSSTVAPLLLSSSPSLPLGPLLFNPNPNSLSLIFSSTTLQPSLHYTPCLLPSRFLLSSHPSSILPSTASSITSLFSSTQQNDAASPFLRNRLHLLTYPHRPYALILFPAGDNDHKLSFFTLRFEDSRFHTQLDTNGDVFYASTGSLHRILNISVNPVTDYDEVDGVIGYFLATTLYSVHWFAARHNQILDRPSVVCLGYKMFKTCPVAHACWSPHILEESLVLLESGHLFLFDLECFGSGAGFKGTRLKVPWNDSSESKAWLSCEFSWHPRILVVARSDAVFLVDLRLKECSVNCLMKIEMLRMYAPDENEQFLALSRAAPDNFYFAVASTSVLLLCDVRKPLVPVLQWVHGIEGPSFMSVLRLSDLRSHSKEDNFKVASESGFCIMLGSIWNCEFNIFCYGSILPFRKGSVTSKINPAICAWEVPLEINLSGHECHCGSCLLRKEFTKDALPEWTDWQQKKEIVLGFGILSNKLAALLTEPDENGGFTLIRLTSSGKFELQRYHASWAPARNLEDCPDQVLCLNRHLLYPMSDEDYKFPKNYNYLKLDYLYSYAYGGLTRFLVRKLKRNFQDAHDKEPFSAEVHELLCEKLNACGFGQLRSCPEVTSVFNDVKLPTSLHEVAWRRMWTDLPMELLQLAFLSRAECHKVIGNLDHNRVALESLAVPELPQLPPFFLRKSSPHGNNDIVGPVIPFPVLLVLNKYRNGCSNLEGEFSIETELSLKYKEVMQVAGEIAVSAYGPTHLDDHAVSLAEDRDETWAGYSKPKSFLLYRPVSFNSSAAAADHVREKSVYSDANYDTFISHIPEKKSTEQTESVGQEIFDDLSPVELRFDAPAKKLEPLGLKAYDLLKRQMSKWQQSFDSYKEFCIQSRFEKK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01785 888 PANTHER TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C 1 883 IPR038801 GO:0006360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01785 Vimu-Chr5 29617876 29620542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01785 - - vum:124832704 1554.65