Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01783 ATGCGCTCCAAGGACAGAATCGCATACTTCTACGACGGCGATGTTGGTAGTGTTTACTTTGGTGCAAAGCATCCAATGAAGCCACACCGGCTTTGCATGACTCATCATCTTGTTCTCTCATATGACCTTCATAAGAAAATGGAGATTTATCGTCCACATAAGGCTTATCCTGTTGAGCTTGCCCAGTTTCACTCGGCTGATTATGTTGAGTTTTTGCACAGGATTACGCCTGACACTCAGCACTTGTTCTTAAATGAACTGACGAAATATAATCTTGGAGAAGACTGCCCTGTATTTGACAACTTGTTTGAATTTTGTCAGATTTATGCTGGCGGAACTATAGATGCTGCACGCCGATTGAACAACCAACTTTGTGATATCGCTATAAACTGGGCTGGTGGACTTCACCATGCCAAGAAATGCGAGGCATCTGGGTTTTGTTACATCAATGACTTGGTTTTAGGAATCTTGGAGCTTCTTAAATATCATGCCCGTGTTTTGTATATTGATATAGATGTGCACCATGGTGATGGCGTTGAAGAAGCCTTCTACTTCACTGATAGGGTGATGACTGTCAGTTTTCATAAGTATGGAGACCTGTTCTTCCCGGGTACTGGTGATGCTAAGGAAATAGGAGAAAGAGAAGGAAAGTTTTATGCGATAAATGTCCCACTGAAGGATGGAATAGATGACCTTAGCTTCACACGACTTTTCAAGACTATTATTTCCAAAGTAGTTGAAACATATCAACCTGGTGCAATAGTTCTCCAGTGTGGAGCAGATTCGCTTGCTGGAGATCGCTTGGGTTGCTTCAATCTCTCTATTGATGGTCACTCCGAATGTGTTAGCTTTGTAAAAAGATTCAATTTGCCATTGCTGGTCACTGGAGGTGGAGGATACACAAAAGAAAATGTTGCTCGATGTTGGACTGTTGAAACAGGAGTTCTTCTAGATACAGAGCTTCCTAATGATTGGAAATGTTTCTTACTTGCTTTGTTCCGTCTTGCAGAGATTCCGGAAAATGATTATATTAAATATTTTGCACCAGAATTCTCTTTGAAGATTCCAAATGGGCAGATAGAAAACCTAAATAGTAAATCATATCTTAGCACTATTAAAATGCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCAAGTGTTCAAATGCAGGAGGTCCCTCCTGACTTCTACATTCCAGATTTCGATGAAGATGAGCAGAACCCTGATGAGCGTATTGATCAGCACACTCACGACAAGCACATCCAACGCGATGATGAATATTATGAAGCTGACAATGACAATGATCAGATGGATGTTTCATGA 1329 0.4108 MRSKDRIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFLNELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDLSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVSFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNDWKCFLLALFRLAEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERIDQHTHDKHIQRDDEYYEADNDNDQMDVS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01783 442 Gene3D Histone deacetylase domain 1 395 IPR037138 -
Vimu5g01783 442 FunFam Histone deacetylase 1 395 - -
Vimu5g01783 442 Pfam Histone deacetylase domain 24 313 IPR023801 -
Vimu5g01783 442 PIRSF HDAC_I_euk 1 442 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 MobiDBLite consensus disorder prediction 400 442 - -
Vimu5g01783 442 PRINTS Histone deacetylase superfamily signature 251 261 IPR000286 -
Vimu5g01783 442 PRINTS Histone deacetylase superfamily signature 165 180 IPR000286 -
Vimu5g01783 442 PRINTS Histone deacetylase superfamily signature 133 156 IPR000286 -
Vimu5g01783 442 SUPERFAMILY Arginase/deacetylase 6 376 IPR023696 -
Vimu5g01783 442 PRINTS Histone deacetylase signature 26 43 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PRINTS Histone deacetylase signature 59 77 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PRINTS Histone deacetylase signature 111 131 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PRINTS Histone deacetylase signature 90 107 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PRINTS Histone deacetylase signature 152 168 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PRINTS Histone deacetylase signature 212 225 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PRINTS Histone deacetylase signature 229 247 IPR003084 GO:0004407|GO:0016575
Vimu5g01783 442 PANTHER HISTONE DEACETYLASE 2-RELATED 3 357 - -
Vimu5g01783 442 MobiDBLite consensus disorder prediction 410 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01783 Vimu-Chr5 29585844 29591451 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01783 K06067 - gmx:100795845 863.218