Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g01767 | ATGGCAATTGATAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGGGAGCGGGCCAGAATGGCTTCTTTTGTTGGGGCCATGGCTATTGCTGACTTGGTCAAGACGACCTTAGGACCAAAGGGAATGGATAAAATTTTGCAGTCTACAGGTAGAGGACGTGAAGTTACTGTCACTAATGATGGGGCTACAATTTTGAAATCCCTCCATATTGATAATCCAGCTGCTAAAGTCCTTTTAGACATATCTAAAGTACAAGATGATGAAGTTGGGGATGGAACCACCTCTGTTGTTGTTTTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCTACCAAGATTCATCCAATGACAATAATATCAGGTTTCCGAATGGCAGCAGAGTGTGCTCGGAATGCTTTGTTAGAGAAGGTTGTGGACAACAAAGCTGATTCTGAGAAATTCAGGTCAGACTTACTGAACATTGCAATGACAACTTTGAGCTCCAAGATTCTTTCACAGGACAAGGAGCATTTTGCAAATTTAGCTGTGGATGCTGTAATGAGGCTAAAGGGAAGCACTAATTTAGAATCTATCCAGATTATTAAAAAACCCGGAGGCTCATTGAAGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATCGGTATTGGACAACCCAAACGGATTGAGAATGCAAAGATACTGGTGGCCAACACTGCCATGGATACAGACAAAGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAACAGCTGAGAAAGAAAAAATGAGAGAAAAGGTGCAGAAGATAATAGGTCATGGTATCAACTGTTTTGTTAACAGGCAGTTAATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGGATATTGGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTCTGGTAACTGGTGGTGAAATTGCATCAACCTTTGACAATCCTGAGTCCGTTAAGCTTGGGCATTGTGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTCTCTGGTGTTGCTATGGGTCAGGCCTGTACAATAGTTCTGAGAGGTGCCAGCCACCATGTTCTCGATGAGGCGGAGAGGTCATTGCATGATGCCCTGTGTGTGCTATCACAGACTGTAAATGACAGCAGAGTGTTGCTTGGAGGTGGGTGGCCGGAGATGGTGATGGCAAAGGAAGTGGATGCGTTGGCTAAGAAAACTCCTGGAAAGAGGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATTCCAACAATCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAGCTCCGTGCAGAGCATCAGAAGGAGGGCTGTACTGCAGGAATTGATGTTATCTCTGGTTCTGTAAGTATTGAAACCAAGAGTCTGGTGAATTTGTTGAGTGATTATCATGATGTTGGAGACATGGCTGAAAGGGGTATATGCGAAGCATTCAAAGTCAAACAAGCTGTGTTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTCAGAGTTGACGAAATCATCACGTGTGCTCCAAGGAGAAGAGAAGATAGAATGTAA | 1635 | 0.4318 | MAIDRIFKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVATKIHPMTIISGFRMAAECARNALLEKVVDNKADSEKFRSDLLNIAMTTLSSKILSQDKEHFANLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIETAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEVDALAKKTPGKRSLAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTAGIDVISGSVSIETKSLVNLLSDYHDVGDMAERGICEAFKVKQAVLLSSTEAAEMILRVDEIITCAPRRREDRM | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01767 | 544 | Gene3D | GroEL | 211 | 363 | IPR027409 | - | |
| Vimu5g01767 | 544 | FunFam | Chaperonin containing TCP1 subunit 2 | 142 | 215 | - | - | |
| Vimu5g01767 | 544 | PANTHER | CHAPERONIN | 11 | 537 | IPR017998 | GO:0140662 | |
| Vimu5g01767 | 544 | NCBIfam | thermosome subunit beta | 6 | 534 | - | - | |
| Vimu5g01767 | 544 | Gene3D | - | 27 | 533 | IPR027413 | - | |
| Vimu5g01767 | 544 | CDD | TCP1_beta | 6 | 539 | IPR012716 | GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082 | |
| Vimu5g01767 | 544 | ProSitePatterns | Chaperonins TCP-1 signature 2. | 58 | 74 | IPR002194 | GO:0005524|GO:0006457|GO:0016887|GO:0051082 | |
| Vimu5g01767 | 544 | ProSitePatterns | Chaperonins TCP-1 signature 3. | 86 | 94 | IPR002194 | GO:0005524|GO:0006457|GO:0016887|GO:0051082 | |
| Vimu5g01767 | 544 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 56 | 74 | IPR017998 | GO:0140662 | |
| Vimu5g01767 | 544 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 367 | 389 | IPR017998 | GO:0140662 | |
| Vimu5g01767 | 544 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 86 | 105 | IPR017998 | GO:0140662 | |
| Vimu5g01767 | 544 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 401 | 413 | IPR017998 | GO:0140662 | |
| Vimu5g01767 | 544 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 32 | 48 | IPR017998 | GO:0140662 | |
| Vimu5g01767 | 544 | ProSitePatterns | Chaperonins TCP-1 signature 1. | 35 | 47 | IPR002194 | GO:0005524|GO:0006457|GO:0016887|GO:0051082 | |
| Vimu5g01767 | 544 | Gene3D | - | 142 | 399 | IPR027410 | - | |
| Vimu5g01767 | 544 | SUPERFAMILY | GroEL apical domain-like | 206 | 372 | IPR027409 | - | |
| Vimu5g01767 | 544 | Pfam | TCP-1/cpn60 chaperonin family | 30 | 534 | IPR002423 | GO:0005524 | |
| Vimu5g01767 | 544 | NCBIfam | T-complex protein 1 subunit beta | 6 | 540 | IPR012716 | GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082 | |
| Vimu5g01767 | 544 | SUPERFAMILY | GroEL equatorial domain-like | 13 | 536 | IPR027413 | - | |
| Vimu5g01767 | 544 | SUPERFAMILY | GroEL-intermediate domain like | 152 | 399 | IPR027410 | - | |
| Vimu5g01767 | 544 | FunFam | T-complex protein 1 subunit beta | 211 | 363 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g01767 | Vimu-Chr5 | 29380020 | 29384216 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g01767 | K09494 | - | gmx:100797805 | 990.719 |