Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01766 ATGGAGTTTGGAAGTGCTCAGAACTTTCTAGAGGGCAAAGCCATTTTAGTCATAGGTGCAACGGGATTCCTGACAAAACTTTTGGTGGAAAAGATATTAAGGGTTCAGCCAAACATAAAAAAGTTATACCTTCTTCTAAGAGCAGGAAATTCAGAAGAAGCTACACAACGGCTGCAGGATGAGGTTCTGTCGAAGGATTTGTTCAGGGTGCTACGAGGAATGTGGGGAGCAGATTTTGTCTCCTTCATATATGAGAAGGTGTTGGCTGTTGGTGGCGATGTTTCTGTTGAGAACTTGGGAGTTAAAGACACAAAGCTGAGAGAAAAGTTGTTGGAAGAGACAGACATCATAATAAATTCTGCTGCTACTACCAATTTTTATGAGAGATTGGATGTTGCAATGGGGATTAATACGATGGGTACTCTTAATGTTCTGAACTTTGCCAAGAACTGTAGTAAATTACAAATGCTTCTTCATGTATCGACAGCTTACGTATGCGGTGAGCGCAAAGGACTTGTGACAGAGAAACCTTTTCATATGGGTGAGACCCTAAATGGGTCCTCAAGATTGGACATAAACTTAGAAAAACTGTTAATTGAAGAGAAATTGAAGGAACTTGAGGCAGAAAATGCCAGTGATAAAACAATCACATCGGTTATGAAAAACCTTGGAACTTTAAGGTCAAACTTACACGGATGGCCAAATGTGTATGCATTTACAAAAGCAATGGGGGAACAGATTTTGATGAACATGAAAGGTGATATACCATTGATCATTGCACGCCCCACCGTAATACTCAGCACTTACTCTGAACCATTTCCCGGTTGGATTGAAGGTGTCAGGTGTATGGTGAAAGAAATTCTTACACAATTTAATTACGTGAATGCAGAACTGTGGACCTCTTTGTTGTTATGTACGATACCAGCAGACATGGTGATAAACTCCATGATAGTAGCACTGGAGGGTTGTTCAAAGAGTTCTTCAAAGACATTGATTTATCATATTGGTTCTTCACTGAGAAATCCATTCAGAATTTCTGATCTTGAGGACTTGGCCCATCAATACTTTACAAAACATCCTTTGACAGACATCTATGGAAAACCAGTGGCGAGTTCCAAGAAAGTTCGGTGGATGTCTAGTGTGAGTTCATTTCACAGATACATCAACATTCGGTACATGCTAGCTCTCAAGGGATTAAACGTGATGAACAAAGTGTGCTGCTACAGTAACGAGGCATTTTACAATGAAAGTAAACAGAAAGTGAAAAAGATGATGAGAATAATGAGACTTTATAAACCTTATCTTCTCTTTGAGGGAATCTTCGATGACAAGAACGCAGAAAATTTAAGGATGAGAAAAATGAAGGGAAAAGATGAGGATGATGATGTTGGAAGATTTAACTTTGATCCCACAACCATTGATTGGACTCATTATATGTTAAACGCTCACATTCCTGGACTTGTGAAGTATGGTGTCAAGTAA 1482 0.392 MEFGSAQNFLEGKAILVIGATGFLTKLLVEKILRVQPNIKKLYLLLRAGNSEEATQRLQDEVLSKDLFRVLRGMWGADFVSFIYEKVLAVGGDVSVENLGVKDTKLREKLLEETDIIINSAATTNFYERLDVAMGINTMGTLNVLNFAKNCSKLQMLLHVSTAYVCGERKGLVTEKPFHMGETLNGSSRLDINLEKLLIEEKLKELEAENASDKTITSVMKNLGTLRSNLHGWPNVYAFTKAMGEQILMNMKGDIPLIIARPTVILSTYSEPFPGWIEGVRCMVKEILTQFNYVNAELWTSLLLCTIPADMVINSMIVALEGCSKSSSKTLIYHIGSSLRNPFRISDLEDLAHQYFTKHPLTDIYGKPVASSKKVRWMSSVSSFHRYINIRYMLALKGLNVMNKVCCYSNEAFYNESKQKVKKMMRIMRLYKPYLLFEGIFDDKNAENLRMRKMKGKDEDDDVGRFNFDPTTIDWTHYMLNAHIPGLVKYGVK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01766 493 Pfam Male sterility protein 19 316 IPR013120 -
Vimu5g01766 493 CDD FAR-N_SDR_e 13 360 - -
Vimu5g01766 493 PANTHER MALE STERILITY PROTEIN 2-RELATED 7 491 IPR026055 GO:0080019
Vimu5g01766 493 CDD FAR_C 422 490 IPR033640 -
Vimu5g01766 493 Coils Coil 189 214 - -
Vimu5g01766 493 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 325 IPR036291 -
Vimu5g01766 493 Pfam Male sterility protein 392 493 IPR033640 -
Vimu5g01766 493 Gene3D - 5 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01766 Vimu-Chr5 29349214 29363410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01766 1 397 Acyl Lipid Metabolism Gene Families AT5G22500 49.876 5.22e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01766 K13356 - gmx:100793736 646.351