Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01709 ATGACTCGTGTGTTAGTTCAGAGGGGTTCTTCCGGCGGTGGTTCTTCTTCTAACGCAAACCGAAGTGGTGGGTCGTCTACCAATCCCTCGGCGCGTGCAGAGGCGCAGGTTTTGGTTTCGCCGGACAATACTGATGAAGTGGTTGTTGGAGGTGACGTTTTGGAGAGTGATGATAAGGGGAAGAGTGAGGAGAGTATTCATTTTGAGCAGGCTGACGGGTCTTGTGATAATGGTGTGACTACAGCTACTGCTGTTGTTGAGAGTGATATAAGGGAAGAGTTTGTGAAGGGGTTAAGTGGATTGAGAATTGGTGAAAGGAATGTTGCGGTGAGTGAGGGTGCGAGTGGGGATTCTTCTTCCCTACCTGTTGGCGGTGGTTCGTGTCCCCCACCTCCTCCGGTGCCGCCTCCCAAGCCTAACTTGAATGCAAGGAGGAGTGTGGCCGGGAGTTTGATTTCAGCTAGCGTGGGATCGTCGAGGAGAACATCTGCATGGCCTGCTGTTCCGGTTAGGACTTCACCTGCTGGGTCTAGGCCATCTTCTCCCCGGTCACATAATGAAAGTGAGGGATATAACAGTGCAGATGAACAGAAGCCTTGTCTGGTTTCTTCTTATGATGATTTTGAAAGGGAGCGGCAGTTTGAAATTGATATCAGAAGGGCAAAAGGTTATGAAGTAAAAAAAATGATGGAGGATGGAAATTGTCTTTTCCGAGCTGTTGCAGATCAGGTGTATGGGGATTCTGAAGTATATGATTTGGTCAGACAGATGTGCATAGATTATATGTGGTTTTATCTTCAGGAACAAGAGAGAGATCACTTCTCTCAATTTATAACGGAAGGATTCACATCTTACTGCAAGAGAAAAAGAAGAGATAAGGTTTATGGAAACAATGTTGAGATACAAGCCATGTGTGAAATGTATAATCGACCAATTCACATCTACTCATACAGCATAGAACCTATTAATATCTTTCATGGAAGCTATAACACTGACACACCGCCAATTCGATTGAGTTATCATCATGGAAATCATTACAACTCCCTTGTTGACCCACGTCGCTCAGCCATTGGCGCTGGTCTTGGATTCAGTAGTCTTCGTGGAACAAATGTTGACAAAGATCAAGTCAAAGATGCTATTAAATCTCAACAGGACGAACAGATCAATAATGCACTTTTAGCTGAGGGTCGGTTTTACTCTGATCTTGAGCTGACAGAAAAGGAAATTGAACGCATGGTGATAGAAGTTTCTCGAGCGGAGTACCTTTCAGATACTAGTACATTTAAGCAACAGCTGGGTGACCGAGAGTCATCTACCTCAAACGCTGAACCATCGTCTTCTGGAGCAAGATCATCAGGCACTGGTCGAAAGACAGAAGATGGGAAAGAGCTGAGCAGTGGGATGCAAATTTTACTGTCGATGGGATTCACATACATCCAAGCGATTGAAGCTTACAGCATATTTGGAGATGATGTTGATTCCATGGTTTGTTACCTCTTAGAAACCGGCAGTAGCAGCAGACGTAAGGGCAAGGCCACTGAATGA 1545 0.4524 MTRVLVQRGSSGGGSSSNANRSGGSSTNPSARAEAQVLVSPDNTDEVVVGGDVLESDDKGKSEESIHFEQADGSCDNGVTTATAVVESDIREEFVKGLSGLRIGERNVAVSEGASGDSSSLPVGGGSCPPPPPVPPPKPNLNARRSVAGSLISASVGSSRRTSAWPAVPVRTSPAGSRPSSPRSHNESEGYNSADEQKPCLVSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSEVYDLVRQMCIDYMWFYLQEQERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYSIEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRSAIGAGLGFSSLRGTNVDKDQVKDAIKSQQDEQINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLSDTSTFKQQLGDRESSTSNAEPSSSGARSSGTGRKTEDGKELSSGMQILLSMGFTYIQAIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01709 514 MobiDBLite consensus disorder prediction 52 70 - -
Vimu5g01709 514 SUPERFAMILY Cysteine proteinases 211 352 IPR038765 -
Vimu5g01709 514 ProSiteProfiles OTU domain profile. 224 352 IPR003323 -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 425 462 - -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 174 188 - -
Vimu5g01709 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 458 502 IPR015940 -
Vimu5g01709 514 PANTHER OTU DOMAIN CONTAINING PROTEIN 164 359 - -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 1 34 - -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 425 454 - -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 1 76 - -
Vimu5g01709 514 FunFam OTU domain-containing protein 5 205 362 - -
Vimu5g01709 514 Gene3D - 206 362 - -
Vimu5g01709 514 CDD OTU_plant_OTU6-like 220 351 - -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 162 196 - -
Vimu5g01709 514 Pfam OTU-like cysteine protease 232 346 IPR003323 -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 112 143 - -
Vimu5g01709 514 MobiDBLite consensus disorder prediction 125 140 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01709 K12655 - gmx:100809162 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01709 5 28799692 28804428 Vimu5g01709 5 28799692 28804428 ECH