Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01708 ATGGTTATGGCGCCTCGGAAACATCGCGAGCGTGAAATGCTGTTCGACTCCGTCATCGCGCTCGTTTTCATCCTCGTCGCCTGCGTCGACCTCTGCGACGGCGCCACCGTTGTTGACGTCTACCGCCTCATCCAGTACGACATGTCCGGCGTTCCTTTCGGATCTCGACTCGCCAGCCTCAACCATCACGCCGCCTCGCTCCACTTCTCTCCACACACTGATCTCTCTCGCACCGTCCTCCTCATACCACTTCGAGAACTTAACATGTCTTTTGTTAAAGAATATATTGCTGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGCTGTTCAGTTTTGAAAACAAGGATGGTAAGGGGAGTAACAATCGAGATGTGAGTACAGAACCGCTGAGGAATGTATTGGCGGAACTTGAACAAATACTCATACACGCGAACTTACCTTATCCTGTTTATTTTGCATTTGAGGATGACAATATTGATGCTGTGTTAGCTGATATCAAGAAGAATGATGTCACTGGTCAACCTGCTACTGCAACAACTGGCGGATACAAATTTGTTGTTTCAGCCGCAGAACCAAGGAAAGTTGTTTCTCCTCCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATAGCAATAGTGGCATCTTATGACACCTTTGGGGCTGCTCCTGCATTATCGGTGGGAAGTGATAGTAATGGAAGTGGCATTGTGGCACTTCTTGAAGTAGCTAGGCTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGGCAATACAATCTGCTGTTTGGGCTAACATCTGGTGGGCCTTACAACTACAATGGAACTCGTAAATGGCTTCGGAGCTTTGATCAACGCCTGCGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGTTCATGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCTCCAGAAAATGCTTTCATTAAGAAAATTGTGGAAGATTTTTCAAGTGTTGCAGAAGAATTAGGTTTTAAAGTGAATTTGAAGCATAAGAAAATAAACATTTCCAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACTCTATCTGAACTCTCTACAGCACCTGAATTGCTAGAAAAGGCTGGTGGTTTGGTTGACAGCAGGCATTTTGTTAATGAAGCAACTATTGTCAGGAGTGTGAAATTAATTGCTGAAAGTCTTGCGAGGCATATTTATGGACACCAAGGAAAGAACATCCAGATATTTGCAGAGAACACTAACTTGGCTGTTAATCCTTCTTATGTTCGATCATGGTTAGATGTTTTGTCCCAAACACCTCGAGTAGCTCCTTTTCTCTCCAAAGATGATCCTTTTGTCATGGCACTGAAAAAGGAATTAGAAGATCATACTGACGAGGTAAATCTGCATAGAGATGTGCTAGAGGGAGTGTTCACTTTCTATGATTCAACCCGGGCAAAGCTGAACATATATCAGGTTGCCAGTGTCACATTTGACTTGCTGTTGCTTCTAGTATTGGGATCATATTTAATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCATCTCGAAAAGTGAAAACTGCATAG 1695 0.4372 MVMAPRKHREREMLFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHTDLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRLFSFENKDGKGSNNRDVSTEPLRNVLAELEQILIHANLPYPVYFAFEDDNIDAVLADIKKNDVTGQPATATTGGYKFVVSAAEPRKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIVEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLEKAGGLVDSRHFVNEATIVRSVKLIAESLARHIYGHQGKNIQIFAENTNLAVNPSYVRSWLDVLSQTPRVAPFLSKDDPFVMALKKELEDHTDEVNLHRDVLEGVFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01708 564 Coils Coil 475 495 - -
Vimu5g01708 564 CDD M28_nicalin_like 137 430 - -
Vimu5g01708 564 Pfam Nicastrin 225 362 - -
Vimu5g01708 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Vimu5g01708 564 Gene3D Zn peptidases 124 425 - -
Vimu5g01708 564 PANTHER NICALIN 13 564 IPR016574 GO:0009966|GO:0016020
Vimu5g01708 564 SUPERFAMILY Zn-dependent exopeptidases 194 408 - -
Vimu5g01708 564 PIRSF Nicalin 3 559 IPR016574 GO:0009966|GO:0016020
Vimu5g01708 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01708 Vimu-Chr5 28788145 28797989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01708 7 562 EF-hand Containing Proteins AT3G44330 72.630 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01708 K26499 - gmx:100779713 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01708 5 28788145 28797989 Vimu5g01708 5 28788145 28797989 ECH