Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01701 ATGGCCAGTGTCATCTCAGCTGTAGGAAGAAGGCTTGAGGGGAAGGTGGCAATGATCACCGGTGGTGCTAGCGGCATCGGTGAGGCCACTGCAAGACTCTTCTCTAAGCATGGAGCACACGTGGTGATAGCTGATATCCAAGACCATTTAGGTCTTTCTCTTAGCAAGGAGTTGGAATCCGCTTCCTATATCCATTGCGATGTCACAAACGAAAACGATGTTGAGAACGCTGTTAACTCGGTGGTTTCCAAACACGGCAAACTAGATACCATGTTCAACAACGCCGGCATAACCGGGGCGAACAAAACCAGCATATTGGACAACACGAAGTCGGAATTTGAGGCAGTGATCAACGTTAACCTTGTTGGTGTTTTTCTTGGAACAAAGCACGCTGCAAGGGTTATGATTCCTGCGCGGAGAGGAAGCATAATCAACACTGCCAGTGTCTGCGGAAGCATAGGTGGCGTGGCTTCACACGCGTACACAGGTTCCAAACACGGTGTGGTGGGGTTGACGAAAAACACTGCGGTGGAGCTTGGAGCATTCGGTGTGAGGGTGAACTGCGTATCACCGTACGTGGTTGCCACACCCTTGGCTAAGAACTTTTTTAAGCTTGACGACAAGGGGTGTCTGGGAGTGTATGCAAACCTAAAAGGTGCTACTCTTGAACCAAACGATGTGGCCGAAGCTGCTCTGTATTTAGCCAGTGATGATTCCAAGTATGTCAGTGGTCTCAATCTTGTGGTTGATGGAGCCTTCACTGTCCTCAACAGTGGCTTTTGTGTCTTTGGACAATCATCATGA 804 0.4925 MASVISAVGRRLEGKVAMITGGASGIGEATARLFSKHGAHVVIADIQDHLGLSLSKELESASYIHCDVTNENDVENAVNSVVSKHGKLDTMFNNAGITGANKTSILDNTKSEFEAVINVNLVGVFLGTKHAARVMIPARRGSIINTASVCGSIGGVASHAYTGSKHGVVGLTKNTAVELGAFGVRVNCVSPYVVATPLAKNFFKLDDKGCLGVYANLKGATLEPNDVAEAALYLASDDSKYVSGLNLVVDGAFTVLNSGFCVFGQSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01701 267 Pfam Enoyl-(Acyl carrier protein) reductase 21 253 - -
Vimu5g01701 267 FunFam Short-chain dehydrogenase reductase 1 258 - -
Vimu5g01701 267 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 148 176 IPR020904 GO:0016491
Vimu5g01701 267 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 255 IPR036291 -
Vimu5g01701 267 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Vimu5g01701 267 PRINTS Glucose/ribitol dehydrogenase family signature 135 151 IPR002347 -
Vimu5g01701 267 PRINTS Glucose/ribitol dehydrogenase family signature 182 199 IPR002347 -
Vimu5g01701 267 PRINTS Glucose/ribitol dehydrogenase family signature 217 237 IPR002347 -
Vimu5g01701 267 PRINTS Glucose/ribitol dehydrogenase family signature 161 180 IPR002347 -
Vimu5g01701 267 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Vimu5g01701 267 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 10 257 - -
Vimu5g01701 267 Gene3D - 4 263 - -
Vimu5g01701 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 IPR002347 -
Vimu5g01701 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Vimu5g01701 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01701 Vimu-Chr5 28725043 28725993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01701 10 255 Acyl Lipid Metabolism Gene Families AT1G24360 30.556 1.07e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01701 - - gmx:100782627 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01701 5 28725043 28725993 Vimu5g01701 5 28725043 28725993 ECH