Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01698 ATGACGCTTGAGGGAAAAGTAGCGATTATAACTGGTGGTGCCAGCGGAATAGGTGAGGCCACTGCAAGACTCTTCTCTAAGCATGGAGCTCATGTGGTGATAGCTGATATTCAAGACGATTTGGGTCTTTCTCTCCGCAATGAGTTGGAATCAGCTGTATATGTTCATTGTGACGTGACAAAGGAAGAAGACGTTGAAAAATGCGTGGACACAGCAGTTTCAAAGTACGGGAAGCTGGACATCATGTTTAATAACGCTGGTACAGGTGACGAGTTCAAAAGAAGCATACTGGACAACACAAAATCTGATTTTGAGAGAGTGATAAGTGTGAACTTGGTTGGTCCATTTCTGGGAACAAAGCACGCTGCAAGAGTCATGATTCCTGCTAAAAGGGGTTGCATAATTAACACAGCTAGTGTTGCAGGATGCATAGGTGGAGGTGCTACACATGCCTACACCAGTTCAAAGCATGCCCTAGTGGGACTAACGAAAAACACTGCGGTGGAGCTTGGACAATTCGGCATTCGGGTGAACTGCGTGTCTCCTTTTGCAATCGTGACACCGTTGTTGAACAAATATTTCAATCTTGATGAAGAAGGAGTTCGTAAGACTTACATGAACCTAAAAGGTTCTTATCCTGTGCCTAACGATGTGGCAGAAGCTGCTCTTTACTTAGCAGGTGATGAGTCTAAGTATGTTAGTTCTCATAATCTTGTGATAGACGGAGGTTTGATCAATTCAAACGTAGGATTTCCTATGTTTGAGATGTAA 771 0.4358 MTLEGKVAIITGGASGIGEATARLFSKHGAHVVIADIQDDLGLSLRNELESAVYVHCDVTKEEDVEKCVDTAVSKYGKLDIMFNNAGTGDEFKRSILDNTKSDFERVISVNLVGPFLGTKHAARVMIPAKRGCIINTASVAGCIGGGATHAYTSSKHALVGLTKNTAVELGQFGIRVNCVSPFAIVTPLLNKYFNLDEEGVRKTYMNLKGSYPVPNDVAEAALYLAGDESKYVSSHNLVIDGGLINSNVGFPMFEM 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01698 256 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 3 248 - -
Vimu5g01698 256 FunFam Short-chain dehydrogenase reductase 1 248 - -
Vimu5g01698 256 CDD secoisolariciresinol-DH_like_SDR_c 3 244 IPR045309 GO:0016616
Vimu5g01698 256 Gene3D - 1 253 - -
Vimu5g01698 256 Pfam Enoyl-(Acyl carrier protein) reductase 12 244 - -
Vimu5g01698 256 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 139 167 IPR020904 GO:0016491
Vimu5g01698 256 PRINTS Glucose/ribitol dehydrogenase family signature 77 88 IPR002347 -
Vimu5g01698 256 PRINTS Glucose/ribitol dehydrogenase family signature 152 171 IPR002347 -
Vimu5g01698 256 PRINTS Glucose/ribitol dehydrogenase family signature 173 190 IPR002347 -
Vimu5g01698 256 PRINTS Glucose/ribitol dehydrogenase family signature 126 142 IPR002347 -
Vimu5g01698 256 PRINTS Glucose/ribitol dehydrogenase family signature 7 24 IPR002347 -
Vimu5g01698 256 PRINTS Glucose/ribitol dehydrogenase family signature 208 228 IPR002347 -
Vimu5g01698 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 IPR002347 -
Vimu5g01698 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 IPR002347 -
Vimu5g01698 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 IPR002347 -
Vimu5g01698 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 244 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01698 Vimu-Chr5 28686393 28687529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01698 3 254 Acyl Lipid Metabolism Gene Families AT1G63380 31.203 1.65e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01698 - - gmx:100794412 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01698 5 28686393 28687529 Vimu5g01698 5 28686393 28687529 ECH