Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01696 ATGGGAAGTTTTTCGCTAGTCTCCTCTGCAGTTGCCAGAAGATTAGAAGGAAAGGTGGCGCTGATCACAGGTGGAGCAAGTGGCATAGGGGAGTGTACGGCGAGACTGATGGCGAAGCACGGAGCCAAAGTAGTCATCGCTGATATCCAAGACGAGTTAGGTCACTCAGTTTCCAAGGAAATAGACTCCTCCGTCTACGTCCACTGCGACGTCACAAAAGAGGAACACGTGGAACATGCAGTGAACACAGCCGTTTCTAGGTTCGGGAAACTAGACATCATGCACAACAATGCAGGGACCATAGAAGTGTGGAACCCCAGCATTATACACAACAAAATTTCCGATTTCCAGCAAGTGATTAACGTCAACTTGGTCGGCGTCTTCCTCGGAATGAAGCATGCGGCGAGGGTAATGAGCCCTTCTCGACGTGGCAGCATAATCGCCACTGCAAGCGTGTGTGGACGCATAGGTGGCGCGGCTTCGCACGCTTACACGTGCTCGAAGCATGGCGTTGTGGGGCTGGTGCGAAACGCTGCAGTGGAGCTTGGAGCCTTGGGAATACGTGTGAACTGTGTGTCTCCTTACGGAGTTCCAACCGCGATGAGTAAGAAGTTTCTGAACACTGATGATGAGGGTATTGCTGCACTTTATTCGAATCTGAAAGGTGTTACTGTGAAAGCGCAAGATGTGGCTGAAGCTGTGGTTTACTTGGGGAGTGATGAGTCCAAGTATGTTAGTGGTCATGATCTTGTTGTGGATGGAGGCTTCACTGTGGTGAATGCTGGTATGTGTGCGTTTGAGTCAAAAGTTTAG 813 0.5031 MGSFSLVSSAVARRLEGKVALITGGASGIGECTARLMAKHGAKVVIADIQDELGHSVSKEIDSSVYVHCDVTKEEHVEHAVNTAVSRFGKLDIMHNNAGTIEVWNPSIIHNKISDFQQVINVNLVGVFLGMKHAARVMSPSRRGSIIATASVCGRIGGAASHAYTCSKHGVVGLVRNAAVELGALGIRVNCVSPYGVPTAMSKKFLNTDDEGIAALYSNLKGVTVKAQDVAEAVVYLGSDESKYVSGHDLVVDGGFTVVNAGMCAFESKV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01696 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 259 IPR036291 -
Vimu5g01696 270 Gene3D - 6 267 - -
Vimu5g01696 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Vimu5g01696 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Vimu5g01696 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Vimu5g01696 270 FunFam Short-chain dehydrogenase reductase 4 262 - -
Vimu5g01696 270 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Vimu5g01696 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 260 - -
Vimu5g01696 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Vimu5g01696 270 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Vimu5g01696 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Vimu5g01696 270 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Vimu5g01696 270 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Vimu5g01696 270 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Vimu5g01696 270 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01696 Vimu-Chr5 28654668 28655594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01696 11 258 Acyl Lipid Metabolism Gene Families AT1G24360 30.709 5.35e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01696 - - gmx:100810754 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01696 5 28654668 28655594 Vimu5g01696 5 28654668 28655594 ECH