Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01694 ATGGGAAGTGTTTCACTAGTCTCCTCTGCAGTTGCCAGAAGATTAGAAGGAAAGGTGGCGTTGATCACAGGCGGAGCAAGTGGCATAGGGGAGTGTACGGCCAGACTGTTCGCCAAGCATGGAGCCAAAGTAGTCATCGCTGATATCCAAGACGAATTAGGCCACTCAGTTTCCAAGGACATAGACTCTTCCTTCTACGTTCACTGCGACGTCACAAAAGAGGATCACGTGGAACGTGCCGTCGACACAGCCGTTTCTAGGTTCGGGAAACTAGACATCATGCACAACAATGCAGGGATAGCAGGAGTGTGGAACCCCAGAATTATGCACAACAAAATGTCCGATTTCCAGGAAGTTATTAACGTCAACTTAGTCGGCGTCTTCCTCGGAATGAAGCATGCGGCGAGGGTAATGGCCCCTTCTCGACGTGGCAGCATAATCGCCACCTCAAGCGTGTGTGGTAGCATAGGTGGCCTGGCTTCGCACGCTTACACGTGCTTGAAGCATGGCGTTCTGGGGCTGGTGCGAAACGCTGCAGTGGAGCTTGGACCATTGGGAGTACGCGTGAACTGTGTGTCTCCTTACGGAGTTCCAACGCCGATGAGTAGGAAGTGTCTGAACACTGATGATGAGGGGATTGCTGCACTTTATTCGAATCTGAAAGGTGTTGCTGTGAAAGCGCAAGATGTGGCTGAAGCTGTGGTTTACTTGGCGAGTGATGAGTCCAAGTATGTTAGTGGTCATGATCTTGTTGTGGATGGAGGCTTCACTGTGGTGAATGCTGGTATGTGTGCGTTTGAGTCACAAGTTTAG 813 0.508 MGSVSLVSSAVARRLEGKVALITGGASGIGECTARLFAKHGAKVVIADIQDELGHSVSKDIDSSFYVHCDVTKEDHVERAVDTAVSRFGKLDIMHNNAGIAGVWNPRIMHNKMSDFQEVINVNLVGVFLGMKHAARVMAPSRRGSIIATSSVCGSIGGLASHAYTCLKHGVLGLVRNAAVELGPLGVRVNCVSPYGVPTPMSRKCLNTDDEGIAALYSNLKGVAVKAQDVAEAVVYLASDESKYVSGHDLVVDGGFTVVNAGMCAFESQV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01694 270 Gene3D - 5 267 - -
Vimu5g01694 270 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Vimu5g01694 270 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Vimu5g01694 270 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Vimu5g01694 270 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vimu5g01694 270 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Vimu5g01694 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Vimu5g01694 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Vimu5g01694 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Vimu5g01694 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Vimu5g01694 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 260 - -
Vimu5g01694 270 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Vimu5g01694 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 259 IPR036291 -
Vimu5g01694 270 FunFam Short-chain dehydrogenase reductase 4 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01694 Vimu-Chr5 28634427 28635345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01694 11 258 Acyl Lipid Metabolism Gene Families AT1G24360 31.496 6.81e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01694 - - gmx:100810754 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01694 5 28634427 28635345 Vimu5g01694 5 28634427 28635345 ECH