Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01685 ATGGGAGTGCCTGCATTCTATAGATGGTTGACTGATAAATATCCCAGGGTGGTACAAGATGTAGACCAAGCCATGCAAGACCCAAATGGAGTGAAATATGATAACTTGTATCTTGACATGAATGCCATCATCCATCCGTGTTTTCACCCTGATAGTGATCATGATGATATTCCACTTCCAACAACATTCGAAGATGTTTTCAGAAATGTCTTTGACTACATTGATAGACTTGTCGACACTGTTAGGCCTCGCAAGCTCGTCTACATGGCTATTGACGGGATTGCCCCACGTGCCAAAATGAACCAGCAACGTTCAAGACGATTCCGAGCTGCTAAGGACAAAGAAATTCATGAAGCTGAGGAAGAGAGGCTAAGGAAACAATTTGAAATGGAAGGGAAACAAGTTCTTCCTAAACAAGAATCTCAAGTGGAAGATTCCAATGTTATAACACCAGGCACTGAGTTCATGCATGAACTCTCAAAGGCACTTAAGGGCTATATCTCTTCAAGGATAAATTGTAACTCATTATGGAAGGATATTATGGTAATTCTCTCTGATGCGAATGTTCCCGGGGAAGGGGAGCATAAGATTATGTCATACATACGCAAACAGCGTACTCTGGAGGAGTATGATCCAAATACCTGTCACTGTATATATGGCTCGGATGCTGATCTGATAATGCTTGCAATGGCGACTCACGAGCCCCATTTTTCAATATTAAGAGAGGATGTCTCTTTTCAGCAGCACCCAAAATTTGCTGCCAAGCCTTTCAAGTTTTTGCATATTTGGCTACTGAGGGAGTATATTGAGTTAGACATGAAGATAGAAAATCCTCCAAAAACTTGTAGCGTTATTGAGCTTGAGAGGATAATTGATGATTTCATCTTCATGTGCTTTTTTGCCGGAAATGATTTTCTGCCCCACCTGCCATCTTTGGATATTCATGAGGGAGTCATTGATTTGCTAATGACTGTTTACAAGGAAGAATTCAGTACTCTTGGAGGACATCTAGTGGACATGAGCAGGGTTGGGGAAAAAAATGCTGCTTTTATGAAGTTATCTAGAGTTGAAAACTTTATACTTAAGGTTGGTGCATATGAAGAGAAAATCTTTAAGAAAAGATCTGAAATACGAGAACGTAAATTGAAAAGGCTTCTTCGAGATAATGAGGATGCCAGGAGGGAAGAAAAGAATGGAAAATGTTTCTTTGATCTTGACGATGAAAATACTTCTGATTGCACTCTTGTGATCAAGAAAGCACCAGATTCAAACTTGTCTCTTTTGGTGAATAATGTTTCTGCTACACATGCTGAAATCGAGCAAAACACAAAGGATTTAAAAGATGAATTGAAGAAAAGTATTAGACAAAAATGTGACTTACTTTTGAGTGAAGATTTCCTAGTTGACAAGATAAAATTTGAAGCACCTGGTTACAAAGAAAGATATTATAAAGCGAAGTTTTCTGTTGAAACTCCTACTGACATTGAGGCAAAAAGGAAGGAAATAGTCCAGAAGTACACTGAAGGATTGGTATGGGTTCTTCAATACTATTTTTCAGCAGTTGCTTCGTGGACATGGTTTTATCCGTTCCACTACGGTCCATTTGCTTCAGATTTAAAGGGCATGAGTCAAGTGAGAGTGAAATTTGAAAAAGGTGTCCCATTCTTACCACTAGATCAACTTTTAAGTGTTCTCCCTCCAGGAAGTGCTCATGCTCTTCCAAAAGCCTATGCACAACTGATGCTAGATGAGAAATCTAGAATCCTTGACTTTTATCCTCAGGATTTTGAAGTTGACACTGAAGGAAAGCGCTTCACCTGGCAGGGAATTTGCAAACTTCCATGGATAGATGATACCCGGCTTGTGGCTGAAACCAAAGAACTCAAAAATGAATTATCGGAAAATGAAGCCATAAGAAATTCACTCAAGGCTGATATCTTGTTTGTTAGAAGCTCTAGCAAATTAGCAGAGAAATTTGGCTCTCTATCTGTTGACCCAAATTGCAAGTTAGACACAAGAATAAGTGATGGCATTGGGGGTACCATAAGTCTTTGCCACGAAGAAGCTTGCTTGGACCTTTGTGACAACAAAGAAGATCGTGTCATATGTGTCTATTACGAGCTTCCTGCTGGTAGTAATCATATTCCTCATTTACTACCGAATGTGAGCCTTCCAGAGAAGGTGATATCATGGAAACTGAACTCTGGCATGAACGTCAGAGATATTTTAGTCGTTTTGAGAGGGTGCAAACTCAAGACAACTGGAGGAGTGAAAACAAGAGCAATAGTTCAAGGGTTTTCTCATATTCAAGTAGACAACATGAAAGAAGCTTTTCATCAAATGGAAGTAGCCAACATGCAAGAAGCTTTTCATCAAATGCAAATAGCCAACATGGAAGAAGCTTTTCATCAAATGCACCTTCCTTTATACACAAAGGTGCTGGTGTTGGATGGGGGGGTTCAGAGTCTGGTTCCTTTCAAAAGTCCACGAGCAGTTTTCAGACACGACCATATGATAAACAATAGTGGTCGCATGAATCAGTCAAAGTATGCTCATAATCATGAAGCTTCACAATCTGAGAGACCTTTTGGTCGGGGACAAGGTAGGGGTGCATCTAGTAGCATTTCATTGCGGCCTCAATGGAGTGGTGCAGAATCTCGTTGGTAA 2667 0.4004 MGVPAFYRWLTDKYPRVVQDVDQAMQDPNGVKYDNLYLDMNAIIHPCFHPDSDHDDIPLPTTFEDVFRNVFDYIDRLVDTVRPRKLVYMAIDGIAPRAKMNQQRSRRFRAAKDKEIHEAEEERLRKQFEMEGKQVLPKQESQVEDSNVITPGTEFMHELSKALKGYISSRINCNSLWKDIMVILSDANVPGEGEHKIMSYIRKQRTLEEYDPNTCHCIYGSDADLIMLAMATHEPHFSILREDVSFQQHPKFAAKPFKFLHIWLLREYIELDMKIENPPKTCSVIELERIIDDFIFMCFFAGNDFLPHLPSLDIHEGVIDLLMTVYKEEFSTLGGHLVDMSRVGEKNAAFMKLSRVENFILKVGAYEEKIFKKRSEIRERKLKRLLRDNEDARREEKNGKCFFDLDDENTSDCTLVIKKAPDSNLSLLVNNVSATHAEIEQNTKDLKDELKKSIRQKCDLLLSEDFLVDKIKFEAPGYKERYYKAKFSVETPTDIEAKRKEIVQKYTEGLVWVLQYYFSAVASWTWFYPFHYGPFASDLKGMSQVRVKFEKGVPFLPLDQLLSVLPPGSAHALPKAYAQLMLDEKSRILDFYPQDFEVDTEGKRFTWQGICKLPWIDDTRLVAETKELKNELSENEAIRNSLKADILFVRSSSKLAEKFGSLSVDPNCKLDTRISDGIGGTISLCHEEACLDLCDNKEDRVICVYYELPAGSNHIPHLLPNVSLPEKVISWKLNSGMNVRDILVVLRGCKLKTTGGVKTRAIVQGFSHIQVDNMKEAFHQMEVANMQEAFHQMQIANMEEAFHQMHLPLYTKVLVLDGGVQSLVPFKSPRAVFRHDHMINNSGRMNQSKYAHNHEASQSERPFGRGQGRGASSSISLRPQWSGAESRW 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01685 888 Pfam Xrn1 helical domain 285 730 IPR041412 -
Vimu5g01685 888 Pfam XRN 5'-3' exonuclease N-terminus 1 243 IPR004859 GO:0003676|GO:0004527
Vimu5g01685 888 MobiDBLite consensus disorder prediction 849 888 - -
Vimu5g01685 888 Coils Coil 375 395 - -
Vimu5g01685 888 CDD PIN_XRN1-2-like 36 269 - -
Vimu5g01685 888 Coils Coil 625 645 - -
Vimu5g01685 888 MobiDBLite consensus disorder prediction 869 888 - -
Vimu5g01685 888 Gene3D - 542 642 - -
Vimu5g01685 888 Coils Coil 429 456 - -
Vimu5g01685 888 PANTHER 5'->3' EXORIBONUCLEASE 1 781 IPR027073 -
Vimu5g01685 888 Gene3D - 137 349 - -
Vimu5g01685 888 Gene3D - 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01685 Vimu-Chr5 28543517 28549008 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01685 - - vra:106779905 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01685 5 28543517 28549008 Vimu5g01685 5 28543517 28549008 ECH