Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01680 ATGATCCCTATGGTAGCAAAAAGAGCAGTAACAGTGCTGCTATACGTGACAGTTCTTCAAAGTGTGAAGGGTTTTGTGCTACACACCAATGATAGGTGGATTGTGAGTGAAAGTGGGAAGAGGGTGAAGCTAGCATGTGTGAACTGGGTGTCCCATTTGGATGGTGTTGTTGCTGAGGGCTTAAACCAACAACCTTTGGATATGATTTCCAAGAGAATCAAGTCTATGGGGTTCAACTGTGTGAGACTCACATGGCCACTTTTCTTGCTCACCAATCACTCTCTTGCTTCTCTCACTGTCAGAAACTCTTTCCAAAACCTTGGCCTTCTTCAATCCATCAATGCTGTTCAAGCCATCAACCCCTCCATCATTGATCTTCCCCTCATCAAAGCTTACCAGGAAGTGGTGAAAAGCTTAGGAGACAATGATGTAATGGTGATTTTGGATAATCACGTGAGCCAACCAGGGTGGTGCTGTAGTAACACGGACGGCAATGGCTTCTTTGGGGACCAATATTTTGATCCTGACCTCTGGATTATGGGTCTTACCAATATGGCTACCCTTTTCAGAGGGGTGAGTAATGTGGTAGGCATGAGCTTGAGAAATGAGTTACGAGGTCCTAAACAAAATGTCAACCAATGGTACAGGTATATGCCAAAGGGAGCAGAAGCAGTGCATGCAGCAAATCCAGAAGTTCTTGTGATTATTTCTGGTCTAAACTTTGACACTGACCTATCATTCATGAAAGAGGAAGCAGTGAAACTGAGCTTCAATGGAAAACTGGTGTTGGAATTGCACTGGTACAGCTTCAGTGAGGGTAAAGCATGGGCCTCACAGAATGCAAACCAAGTGTGTGGGGAAGTCACAGCAAATGTGATGAGAAGGGCAGGGTTCCTTTTGGGCCAAGGCTTCCCATTATTTGTCAGTGAGTTTGGGCTGGACTTGAGAGGCTCAGATGCCAATGACAATATCTACCTAAACTGCTTCATGGCATTTGCAGCCCAATTTGACTTGGATTGGGCCTTGTGGACCCTTGGTGGGAGTTACTACATAAGACAAGGAGTTGTTGGAATGAATGAGTATTATGGTATTCTCAATTCATATTGGAGTGAGGTTAGAAACCCTAGTTTCTTGCAAAGGATCTCAGCTATTCAAATTCCTTTTCAAGGGCCAGGTTTATCAGAAGCAAAACCATACAAAGTGATTTTTCATCCTTTGACAGGTCTTTGCATCATAAGAAAATCACTGGTTGAGGCGTTGAGGTTGGGATCTTGTTCTGATTCTGATGAATGGGAGTACACAGACCAAAACACATTATCGATAAAGGGTACCTATTTCTGTTTACAAGCAGAGGGAGAAGGGAAGCAAGCAAAAATTGGTAATATATGCTCAGCTCCCAATTCAAGATGGGAAATGATCTCTGATTCAAAGATGCATCTATCAGCTCAAATCAATAACTCTTCTGGGGTGTGTCTTGATGCAGACACCAATAACATCATTGTCACCAACACTTGCAAATGTCTAACCAAAGATAACACTTGTGAACCTGCAAGCCAATGGTTTAAACTTGTTGACAGCACAAGGAATTAA 1590 0.4308 MIPMVAKRAVTVLLYVTVLQSVKGFVLHTNDRWIVSESGKRVKLACVNWVSHLDGVVAEGLNQQPLDMISKRIKSMGFNCVRLTWPLFLLTNHSLASLTVRNSFQNLGLLQSINAVQAINPSIIDLPLIKAYQEVVKSLGDNDVMVILDNHVSQPGWCCSNTDGNGFFGDQYFDPDLWIMGLTNMATLFRGVSNVVGMSLRNELRGPKQNVNQWYRYMPKGAEAVHAANPEVLVIISGLNFDTDLSFMKEEAVKLSFNGKLVLELHWYSFSEGKAWASQNANQVCGEVTANVMRRAGFLLGQGFPLFVSEFGLDLRGSDANDNIYLNCFMAFAAQFDLDWALWTLGGSYYIRQGVVGMNEYYGILNSYWSEVRNPSFLQRISAIQIPFQGPGLSEAKPYKVIFHPLTGLCIIRKSLVEALRLGSCSDSDEWEYTDQNTLSIKGTYFCLQAEGEGKQAKIGNICSAPNSRWEMISDSKMHLSAQINNSSGVCLDADTNNIIVTNTCKCLTKDNTCEPASQWFKLVDSTRN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01680 529 Pfam Cellulase (glycosyl hydrolase family 5) 61 346 IPR001547 GO:0004553|GO:0071704
Vimu5g01680 529 SUPERFAMILY (Trans)glycosidases 27 378 IPR017853 -
Vimu5g01680 529 CDD RICIN 399 505 IPR000772 -
Vimu5g01680 529 Gene3D - 402 522 - -
Vimu5g01680 529 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 12 528 - -
Vimu5g01680 529 SUPERFAMILY Ricin B-like lectins 397 523 IPR035992 -
Vimu5g01680 529 Gene3D Glycosidases 25 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01680 Vimu-Chr5 28511763 28515681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01680 25 528 Glycoside Hydrolase AT1G13130 59.172 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01680 - - gmx:100816102 897.116