Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01676 ATGGAAAATCATGGTGGGAAGAAGAGAGTGGTGGTCGTAGGAGGGGGTATTGCGGGTTCTCTCGTCGCTAAATCTCTTCAATTCACTGCCCATGTTACCCTCATTGATCCGAAGGAATACTTTGAGATTACATGGGCAAGTTTGAGATCAATGGTTGAGCCTTCTTTTGCAGAGAGATCTGTGATCAATCATAAAGATTACCTTGTCCATGGCAATATCATTACTTCCAGTGCCGTCAATGTTACAGAAACTGATGTGATCACAGCCGATGGCCATAAAATTGCCTTTGACTATCTTGTTATTGCCACTGGCCATGCAGATGACGTCCCCAAAATTAGGAGGGACAGACTTCATCAGTTCGTAGAATACAATGAAAGGATAAGATCTGCTCGTTCCATTATGATTGTTGGAGGAGGTCCTACTGGTGTGGAACTTGCTGCAGAGATAGCTGTTGATTTTCCACATAAGAAGATCACGATAGTGCACAAAGGACCTAGGCTACTGGATTTCGTAGGGACAAAAGCTGCGGATAAGACTCTAAAATGGTTGGAATCAAGAAATATAGTGGTGAAACTAGAGCAATCAATTGACTTGAAGGAATTATCATATGAAAACAAGACATATCGAACTTCAAATGGAGAAACCTTTGAGGCAGATTGTTATTTCTTATGTTTAGGGAAACCACTTGCATCAGCATGGCTTGAGGAAACTATGTTGAAGCATGACATGGATGAGGAAGGAAGGATTAAGGTAGATGAAAAGTTGAGAGTCATTGGTAGGAGAAACATTTTTGCAATTGGAGACATTACAGATATTCCAGAAATCAAGCAAGGATTTGCAGCACAACAGCATGCAGAAGTGGTTGTGAAGAACTTGAAGGTGATGATAGATGGAGGAAGAGATTGTGGTCAATGTAGGATGGAAAATTACAAGCCACAGATGCCAATGGCAATCGTTTCACTTGGGAGGAAAGATGCTGTGGCACAACTACCATTAATGACAGTCATTGGAAGAGTTCCTGGGTACATCAAATCTGGAGATTTATTTGTTGGTAGAACAAGGAGACAAATGGGACTAGATCCTCATACTGTGCATACTTGA 1101 0.4142 MENHGGKKRVVVVGGGIAGSLVAKSLQFTAHVTLIDPKEYFEITWASLRSMVEPSFAERSVINHKDYLVHGNIITSSAVNVTETDVITADGHKIAFDYLVIATGHADDVPKIRRDRLHQFVEYNERIRSARSIMIVGGGPTGVELAAEIAVDFPHKKITIVHKGPRLLDFVGTKAADKTLKWLESRNIVVKLEQSIDLKELSYENKTYRTSNGETFEADCYFLCLGKPLASAWLEETMLKHDMDEEGRIKVDEKLRVIGRRNIFAIGDITDIPEIKQGFAAQQHAEVVVKNLKVMIDGGRDCGQCRMENYKPQMPMAIVSLGRKDAVAQLPLMTVIGRVPGYIKSGDLFVGRTRRQMGLDPHTVHT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01676 366 Gene3D - 6 347 - -
Vimu5g01676 366 PRINTS FAD-dependent pyridine nucleotide reductase signature 10 29 - -
Vimu5g01676 366 PRINTS FAD-dependent pyridine nucleotide reductase signature 248 270 - -
Vimu5g01676 366 PRINTS FAD-dependent pyridine nucleotide reductase signature 96 114 - -
Vimu5g01676 366 PRINTS FAD-dependent pyridine nucleotide reductase signature 132 150 - -
Vimu5g01676 366 SUPERFAMILY FAD/NAD(P)-binding domain 6 272 IPR036188 -
Vimu5g01676 366 PANTHER APOPTOSIS-INDUCING FACTOR 1 6 359 - -
Vimu5g01676 366 Pfam Pyridine nucleotide-disulphide oxidoreductase 8 284 IPR023753 GO:0016491
Vimu5g01676 366 FunFam apoptosis-inducing factor 2 6 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01676 Vimu-Chr5 28470699 28473813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01676 10 276 EF-hand Containing Proteins AT4G28220 23.824 1.23e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01676 K22745 - gmx:100785294 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01676 5 28470699 28473813 Vimu5g01676 5 28470699 28473813 ECH