Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01627 ATGGTATCCTCCAAATTCTTCTCCTTTTCAATACTCTTGCTATCCACAACACTGCTTTACGTAACCGAAGCCCAAGAGTCTCTTCCAAAAACCATGCTTTTGTATCTCCAAGAAACAGTAAAAGGACCCAACGCAACCGTTTCTCCGATCATTGGCCTCACCGGAAAAGATTGGTCCTTCCATCAATTCGGAACCGTATTTGCAGTGGATGATCCTGTCATGGTGAGCCCAAACCAATTCTCCTCTGTAGTGGGCCGGGCCCAAGGCCTGCTTGTAGTGTCGGCCCAGGATGGGGCCAATATGTTTGTTTCACTTTCAATTGTGTTTACGAACTTGCAGTACAGTGGTAGCAGCATAGAGATCCAAGGCGTTAGTCGTCAATCTGAGAAATACAGAGAACTCTCTATAGTCTCTGGAACTGGCAAATTTCGATTTGTAAAGGGCTATGCTGCATTTCAGACCACATTCTATGATGCCCAAACTTCACATTCTACCATCTCTTTGACTCTAACTTTCCAATGA 522 0.4483 MVSSKFFSFSILLLSTTLLYVTEAQESLPKTMLLYLQETVKGPNATVSPIIGLTGKDWSFHQFGTVFAVDDPVMVSPNQFSSVVGRAQGLLVVSAQDGANMFVSLSIVFTNLQYSGSSIEIQGVSRQSEKYRELSIVSGTGKFRFVKGYAAFQTTFYDAQTSHSTISLTLTFQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01627 173 PANTHER NUCLEOPORIN-RELATED 25 167 IPR004265 -
Vimu5g01627 173 Gene3D - 19 170 IPR044859 -
Vimu5g01627 173 Pfam Dirigent-like protein 31 171 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01627 Vimu-Chr5 27838187 27838708 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01627 - - gmx:102661321 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01627 5 27838187 27838708 Vimu5g01627 5 27838187 27838708 ECH