Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01618 ATGGGGTGCTCCATGAGAGTGTGCAGTGTCTTATTTTTGACAGTGTTGTTAGTGGCATGTGCAAGAGGGGAGGACCCTTATAGGTTTTACACTTGGAATGTCACATATGGAGACATTTATCCTCTTGGTGTTAAACAACAGGGGATTTTGATAAACTGGCAATTTCCAGGGCCACAAATTGAGGCCGTGACCAATGATAACTTGATCATCAATGTTTTCAATAGCTTGGATGAACCTTTCCTCTTATCTTGGAATGGAGTGTTGCAGAGGAGAAACTCATGGCAGGATGGAGTGTATGGTACCAATTGTCCAATTCCACCAGGGCAGAACTTCACTTATGTTATTCAAGTGAAGGATCAAATTGGTAGCTACTTCTACTACCCTTCTCTTGCATTCCACAAGGCAGCAGGAGGTTATGGTGGATTCAAAATTGCGAGCCGCCCCGGGATTCCAGTGCCTTTCCCTCCTCCGGCAGGAGAGTTCACCGTATTGGCCGGAGACTGGTACAAGAGAAATCATACAGAGACTAAACCATCAGCAAAATTGTGTTTATTCTTGCAGGATTTGAGGGCAATTTTAGATGGTGGAAATGACCTTCCCTTCCCTGATGGACTTATCATCAATGGACGTGGTTCTAATGCCTACACATTCACAGTTGATCAAGGCAAGACATACAGATTCAGGATTTCAAATGTGGGTCTCACAACTTCAATCAATTTCAGAATCCAAGGTCATAAAATGACAATTGTTGAGGTGGAAGGGACCCACACTCTCCAGAACATTTATGATTCACTTGATGTTCATCTGGGCCAGAGTTACTCTGTGTTGGTTACAGCTGATCAGCCACCCCAAGACTATCTTATTGTTGTCACAACACGATTTACCTCTCAAGTGTTGAATGCTACCTCCATTTTTCGTTACAGTAACTCTGGAGGAAGTGTTACTGGCCTTTTTCCTTGGGGGCCAACTATTCAAGTTGATTGGTCTTTAAACCAAGCTCGCTCTCTTAGGAGGAATTTGACAGCAAGTGGGCCAAGGCCTAATCCACAAGGATCATACCATTATGGTTTGATAAATACAACTCGTACAGTTAGACTTCAAAATTCTGCTCCAGTTATCAATGGCAAACAGAGATATGCTGTGAATAGTGTGTCCTTCATACCTGCTGATACACCACTTAAACTGGCTGATTACTACAAGATCCAAGGTGTGTTCTCTCTTGGAAGTATCTCTGACAACCCCACTGGTGGTGGTGGTTACCTTCAAACTTCTGTCATGGAAGCCGATTTCCGTGGCTTTCTGGAGGTTGTGTTTGAGAATACTGAAGACACTGTGGAATCTTGGCACATTGACGGCCACAGCTTCTTTGTAGTAGGAATGGATGGAGGACAATGGTCACAAGCTAGCAGGCTTGGTTACAATTTAAGAGATACAATTTCTCGTTCCACAGTTCAGGTTTATCCCAAGTCATGGACTGCACTTTACGTGCCTTTGGACAATGTGGGAATGTGGAATGTGAGATCTGAGAATTGGGTTCATCAGTATTTGGGCCAGCAATTCTATCTGAGGGTTTATTCTCCTGCAAATTCATGGAGAGATGAGTACCCAATTCCAAGTAATGCTTTGAGGTGTGGCAAAGCTGTGGGTCACTATTAA 1656 0.436 MGCSMRVCSVLFLTVLLVACARGEDPYRFYTWNVTYGDIYPLGVKQQGILINWQFPGPQIEAVTNDNLIINVFNSLDEPFLLSWNGVLQRRNSWQDGVYGTNCPIPPGQNFTYVIQVKDQIGSYFYYPSLAFHKAAGGYGGFKIASRPGIPVPFPPPAGEFTVLAGDWYKRNHTETKPSAKLCLFLQDLRAILDGGNDLPFPDGLIINGRGSNAYTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMTIVEVEGTHTLQNIYDSLDVHLGQSYSVLVTADQPPQDYLIVVTTRFTSQVLNATSIFRYSNSGGSVTGLFPWGPTIQVDWSLNQARSLRRNLTASGPRPNPQGSYHYGLINTTRTVRLQNSAPVINGKQRYAVNSVSFIPADTPLKLADYYKIQGVFSLGSISDNPTGGGGYLQTSVMEADFRGFLEVVFENTEDTVESWHIDGHSFFVVGMDGGQWSQASRLGYNLRDTISRSTVQVYPKSWTALYVPLDNVGMWNVRSENWVHQYLGQQFYLRVYSPANSWRDEYPIPSNALRCGKAVGHY 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01618 551 CDD CuRO_3_AAO_like_1 388 510 IPR034275 GO:0005507
Vimu5g01618 551 Gene3D - 356 549 IPR008972 -
Vimu5g01618 551 Pfam Multicopper oxidase 391 525 IPR011706 GO:0005507|GO:0016491
Vimu5g01618 551 CDD CuRO_1_AAO_like_1 29 145 IPR034273 GO:0005507
Vimu5g01618 551 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vimu5g01618 551 Pfam Multicopper oxidase 160 309 IPR001117 -
Vimu5g01618 551 SUPERFAMILY Cupredoxins 154 347 IPR008972 -
Vimu5g01618 551 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Vimu5g01618 551 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Vimu5g01618 551 PANTHER MULTI-COPPER OXIDASE 45 520 IPR045087 -
Vimu5g01618 551 FunFam Monocopper oxidase-like protein 357 551 - -
Vimu5g01618 551 SUPERFAMILY Cupredoxins 357 547 IPR008972 -
Vimu5g01618 551 Gene3D - 158 345 IPR008972 -
Vimu5g01618 551 Gene3D - 27 148 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01618 Vimu-Chr5 27717611 27721792 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01618 - - gmx:100797670 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01618 5 27717611 27721792 Vimu5g01618 5 27717611 27721792 ECH