Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01617 ATGGAAGATTCTCACCAGCACGACCACCACCACCACCCCGACGACACCCATGATCACCCACCCTCCTCCTCCCCTCCCACCACCGGCACCTGCTGCAAGTGCGGAGGTCCTACAACCTTTGCCCCCCCTATGCCAACCCCTATCTTCTCCCCTCCCCCAACCTACCGCCCCATCCGCGCCCCAGCAATCCCCCCAGACCCCAATTCTACCCGCGCTATCATCCTCTCCCCGGTTCCACAACCCCAAAAGGTTCCCATTTTGCCGCCACCCTACGACTTCCACACCCCCACCAAGCGCATTCACTCCCCCGATGATATTCGCCGCTTCCACGACTCCTTCTCCGGCAAAAACTTCCTCGGCTTCGTCGTCGCACTCTCCGAATCCATCCGCGGACGCAAAATCTCCGATCAGTGTCACGAATCCCCGACCATTCTCGCCGTGCTATCTATCCTCGAAACCCTAACCCTATTCGCGGACGAAACCCCCCCTGTCCCACAATCTGCGCGCTACGGAAACGTCGCGTATCGCACCTGGCACGAGAAAATGTCCAATTCCGCAGAATCACTGATCTTAAAGCTCCTCCCGGAGAATCTGCGCCCGGCGACTGTCGAACTCGTGCCTTACTTTACTGACTCCTTCGGTAACGCGAGCCGCATCGACTACGGCACCGGCCACGAGACGAATTTTGCGGCGTGGCTGTACTGCCTGGCGCGGCTGGGAGTGGTCGGAGAGGAGGATTATCCGGCTCTAGTGGCGAGGGTGTTCGTGAAGTACTTGGATCTCATGAGGAAATTGCAGTTGTTGTATTGCTTGGAGCCTGCAGGATCTCATGGTGTGTGGGGGCTTGATGATTACCACTTTTTGCCCTTCATATTTGGGTCTTCGCAGTTGATTGATCACAAATATATGAAGCCTAAGTCCATTCATAATGAGGATATCTTGGAGAATTTCTCCAAGGAGTATCTTTACCTTGCTTGCATTGCCTTTGTGAAGAAGGTGAAGAAGGGGGTGTTTGCCGAGCACTCGCCCATGTTGGATGATATCAGTGGGGTGCCCAATTGGAACAAGGTGAACGGTGGGTTGCTCAAGATGTACAAGGCTGAGGTTCTTGAAAAGGTCCCCATCATGCAGCATTTCCTCTTTGGATCGATAATTAAGTGGTATGTGCGATGCTCTTTGTATTGCTTTGATTTGGTTCCCTCTATGCACTTAAATGTGTTTACCGCAGTTGCACTGTAG 1239 0.5391 MEDSHQHDHHHHPDDTHDHPPSSSPPTTGTCCKCGGPTTFAPPMPTPIFSPPPTYRPIRAPAIPPDPNSTRAIILSPVPQPQKVPILPPPYDFHTPTKRIHSPDDIRRFHDSFSGKNFLGFVVALSESIRGRKISDQCHESPTILAVLSILETLTLFADETPPVPQSARYGNVAYRTWHEKMSNSAESLILKLLPENLRPATVELVPYFTDSFGNASRIDYGTGHETNFAAWLYCLARLGVVGEEDYPALVARVFVKYLDLMRKLQLLYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNEDILENFSKEYLYLACIAFVKKVKKGVFAEHSPMLDDISGVPNWNKVNGGLLKMYKAEVLEKVPIMQHFLFGSIIKWYVRCSLYCFDLVPSMHLNVFTAVAL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01617 412 FunFam Serine/threonine-protein phosphatase 2A activator 282 393 - -
Vimu5g01617 412 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 96 387 IPR004327 GO:0019211
Vimu5g01617 412 CDD PTPA 118 382 IPR004327 GO:0019211
Vimu5g01617 412 Gene3D - 282 393 IPR043170 -
Vimu5g01617 412 SUPERFAMILY PTPA-like 88 388 IPR037218 GO:0019211
Vimu5g01617 412 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 82 387 IPR004327 GO:0019211
Vimu5g01617 412 MobiDBLite consensus disorder prediction 1 30 - -
Vimu5g01617 412 MobiDBLite consensus disorder prediction 80 99 - -
Vimu5g01617 412 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01617 K17605 - gmx:100791085 616.69