Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01614 ATGGTCGTAAACCTCTCTCCCTCTCCACTTTTACATTCCAGTTCCATAATTAGATTGGCCAATTCTAAGTCACCCATTTCAGAATCTTGGCACAGGCTCAAAACCCATTTCCCAAAACCACTTCTTTCCCCTTCTTTTTCCTCCCCCAGCGTCAACTTTGCGTGCAAGAAGCAGTTTTTGCATGGAAACAGCAGGAACAGGTTGGATTTTAGGACTTTGTCTATTGCTGGATTTGACTATGGGAACTTTGAGGGGCCTCAGTCTGTGCTTGAGGCTGCTGCAGTGTTGACAGCCATCATTGTTGTGCATGAGAGTGGTCACTTTCTTGCTGCTTATCTCCAAGGCATTCATGTGAGTAAGTTTGCTGTAGGGTTTGGTCCAATTTTAGCGAAGTTTAATGCCAAAAATGTAGAATATTCCATCAGGGCTTTTCCTCTAGGGGGCTTTGTGGGGTTCCCTGATAATGATCCAGAGAGTGATATTCCTGTTGATGATGCGAACTTGCTTAAGAACAGACCAATATTGGATAGGGTGATTGTGGTTTCAGCTGGTGTTGTTGCTAACATAATTTTTGCATTTCTTATCATCTTTGCCCAAGTCCTGTCTGTTGGTTTGCCTGAGCAAGAGGTCTTTCCTGGGGTGAGTGTGCCTGATGTTAGACCCTTTTCAGCTGCTTCCAGGGATGGATTGCTTGCCGGAGATGTGATCCTTGAGGTTAATGGTAGTGAGTTTGCTAAACCAGGTCCTAGTGCAGTTTCTGAAGTTGTTGAGATCATCAAGAGGAACCCTAAGAGGTATGTTTTGCTCAAGATTAAAAGAGGGGGGCAGAATTTTGATGTAAAGGTCACCCCAGATGAGAATTATGATGGAACTGGGAAAATTGGAGTGCAGCTGGCCCCTAACGTGAAAATAGGTAAAGTTAAGCCAAAAAATTTGGGGGAGGCGGTAGAGTTTACTTGGAAAGAGTTTTGGGGTCTATCATCTAATGTTTTAGATGGGTTAAAACAAACATTCTTAAACTTCTCCCAGTCAGCTAGTAAGGTTTCAGGTCCTGTGGCCATTATTGCTGTTGGTGCTGAGGTTGCACGGTCGAATATCGATGGTCTCTTCCAGTTTGCTGCAATACTCAACATTAACCTTGCGGTTATAAACCTTCTTCCTTTGCCTGCTTTAGATGGAGGCACATTAGCACTGATCCTCGTTGAGGCTGCCAGGGGTGGGAGAAAGTTACCATTGGAAGTGGAGCAAACTATTATGTCTTCTGGAATTATGCTTGTTATAATTCTGGGGTTAATCCTTATTGTTCGTGATACCCTGAACCTTGAATTTATCAAAGACTTGTTGTGA 1347 0.4358 MVVNLSPSPLLHSSSIIRLANSKSPISESWHRLKTHFPKPLLSPSFSSPSVNFACKKQFLHGNSRNRLDFRTLSIAGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAAYLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDANLLKNRPILDRVIVVSAGVVANIIFAFLIIFAQVLSVGLPEQEVFPGVSVPDVRPFSAASRDGLLAGDVILEVNGSEFAKPGPSAVSEVVEIIKRNPKRYVLLKIKRGGQNFDVKVTPDENYDGTGKIGVQLAPNVKIGKVKPKNLGEAVEFTWKEFWGLSSNVLDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLFQFAAILNINLAVINLLPLPALDGGTLALILVEAARGGRKLPLEVEQTIMSSGIMLVIILGLILIVRDTLNLEFIKDLL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01614 448 SUPERFAMILY PDZ domain-like 212 304 IPR036034 GO:0005515
Vimu5g01614 448 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 84 443 IPR004387 GO:0004222|GO:0006508|GO:0016020
Vimu5g01614 448 CDD S2P-M50_PDZ_RseP-like 89 205 - -
Vimu5g01614 448 Gene3D - 205 299 IPR036034 GO:0005515
Vimu5g01614 448 ProSiteProfiles PDZ domain profile. 213 274 IPR001478 GO:0005515
Vimu5g01614 448 NCBIfam RIP metalloprotease RseP 218 441 IPR004387 GO:0004222|GO:0006508|GO:0016020
Vimu5g01614 448 Pfam PDZ domain 217 273 IPR041489 -
Vimu5g01614 448 CDD PDZ_metalloprotease 201 284 - -
Vimu5g01614 448 SMART pdz_new 201 275 IPR001478 GO:0005515
Vimu5g01614 448 Pfam Peptidase family M50 93 429 IPR008915 GO:0006508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01614 - - gmx:100800101 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01614 5 27658849 27661882 Vimu5g01614 5 27658849 27661882 ECH